Merge branch 'develop' into dropout

update-doc-pybind
Xinghai Sun 8 years ago
commit 0532662902

1
.gitignore vendored

@ -22,6 +22,7 @@ cmake-build-*
# generated while compiling
python/paddle/v2/framework/core.so
paddle/pybind/pybind.h
CMakeFiles
cmake_install.cmake
paddle/.timestamp

@ -4,7 +4,6 @@ cache:
- $HOME/.ccache
- $HOME/.cache/pip
- $TRAVIS_BUILD_DIR/build/third_party
- $TRAVIS_BUILD_DIR/build_android/third_party
sudo: required
dist: trusty
os:
@ -12,7 +11,6 @@ os:
env:
- JOB=build_doc
- JOB=check_style
- JOB=build_android
addons:
apt:
packages:
@ -23,7 +21,6 @@ addons:
- python
- python-pip
- python2.7-dev
- python-numpy
- python-wheel
- libboost-dev
- curl
@ -37,8 +34,8 @@ before_install:
- if [[ "$JOB" == "check_style" ]]; then sudo ln -s /usr/bin/clang-format-3.8 /usr/bin/clang-format; fi
# Paddle is using protobuf 3.1 currently. Protobuf 3.2 breaks the compatibility. So we specify the python
# protobuf version.
- pip install -r $TRAVIS_BUILD_DIR/python/requirements.txt
- pip install wheel sphinx==1.5.6 recommonmark sphinx-rtd-theme==0.1.9 virtualenv pre-commit LinkChecker
- sudo pip install -r $TRAVIS_BUILD_DIR/python/requirements.txt
- sudo pip install wheel sphinx==1.5.6 recommonmark sphinx-rtd-theme==0.1.9 virtualenv pre-commit LinkChecker
- curl https://glide.sh/get | bash
- eval "$(GIMME_GO_VERSION=1.8.3 gimme)"
- go get -u github.com/alecthomas/gometalinter

@ -65,8 +65,11 @@ if(NOT CMAKE_BUILD_TYPE)
endif()
if(ANDROID)
if(${CMAKE_SYSTEM_VERSION} VERSION_LESS "21")
message(FATAL_ERROR "Unsupport standalone toolchains with Android API level lower than 21")
if(${CMAKE_SYSTEM_VERSION} VERSION_LESS "16")
message(FATAL_ERROR "Unsupport standalone toolchains with Android API level lower than 16")
elseif(${CMAKE_SYSTEM_VERSION} VERSION_LESS "21")
# TODO: support glog for Android api 16 ~ 19 in the future
message(WARNING "Using the unofficial git repository <https://github.com/Xreki/glog.git> instead")
endif()
set(WITH_GPU OFF CACHE STRING

@ -4,9 +4,16 @@ MAINTAINER PaddlePaddle Authors <paddle-dev@baidu.com>
ARG UBUNTU_MIRROR
RUN /bin/bash -c 'if [[ -n ${UBUNTU_MIRROR} ]]; then sed -i 's#http://archive.ubuntu.com/ubuntu#${UBUNTU_MIRROR}#g' /etc/apt/sources.list; fi'
# ENV variables
ARG ANDROID_ABI
ARG ANDROID_API
ENV ANDROID_ABI=${ANDROID_ABI:-"armeabi-v7a"}
ENV ANDROID_API=${ANDROID_API:-21}
ENV HOME=/root \
ANDROID_NDK_HOME=/opt/android-ndk-linux \
ANDROID_STANDALONE_TOOLCHAIN=/opt/android-toolchain-gcc
ANDROID_TOOLCHAINS_DIR=/opt/toolchains
RUN apt-get update && \
apt-get install -y \
@ -15,12 +22,11 @@ RUN apt-get update && \
apt-get clean -y
# Install Go and glide
RUN wget -O go.tgz https://storage.googleapis.com/golang/go1.8.1.linux-amd64.tar.gz && \
tar -C /usr/local -xzf go.tgz && \
RUN wget -qO- go.tgz https://storage.googleapis.com/golang/go1.8.1.linux-amd64.tar.gz | \
tar -xz -C /usr/local && \
mkdir /root/gopath && \
mkdir /root/gopath/bin && \
mkdir /root/gopath/src && \
rm go.tgz
mkdir /root/gopath/src
ENV GOROOT=/usr/local/go GOPATH=/root/gopath
# should not be in the same line with GOROOT definition, otherwise docker build could not find GOROOT.
ENV PATH=${PATH}:${GOROOT}/bin:${GOPATH}/bin
@ -37,13 +43,12 @@ RUN pip install --upgrade pip && \
pip install pre-commit
# Android NDK
RUN mkdir /opt/android-ndk-tmp && \
RUN mkdir -p ${ANDROID_TOOLCHAINS_DIR} && \
mkdir -p /opt/android-ndk-tmp && \
cd /opt/android-ndk-tmp && \
wget -q https://dl.google.com/android/repository/android-ndk-r14b-linux-x86_64.zip && \
unzip -q android-ndk-r14b-linux-x86_64.zip && \
mv android-ndk-r14b ${ANDROID_NDK_HOME} && \
${ANDROID_NDK_HOME}/build/tools/make-standalone-toolchain.sh --arch=arm --platform=android-21 --install-dir=${ANDROID_STANDALONE_TOOLCHAIN} && \
rm -rf /opt/android-ndk-tmp && \
rm -rf ${ANDROID_NDK_HOME}
rm -rf /opt/android-ndk-tmp
CMD ["bash", "/paddle/paddle/scripts/docker/build_android.sh"]

@ -26,9 +26,9 @@ set(IGNORE_PATTERN
.*ImportanceSampler.*
.*cblas\\.h.*
.*\\.pb\\.txt
.*LtrDataProvider.*
.*MultiDataProvider.*
.*pb.*)
.*pb.*
.*pybind.h)
# add_style_check_target
#

@ -20,6 +20,7 @@
# The supported variables are listed belows:
#
# ANDROID_STANDALONE_TOOLCHAIN
# ANDROID_TOOLCHAIN
# ANDROID_ABI
# ANDROID_NATIVE_API_LEVEL
# ANDROID_ARM_MODE
@ -57,6 +58,10 @@ IF(NOT DEFINED CMAKE_SYSTEM_VERSION AND ANDROID_NATIVE_API_LEVEL)
ENDIF()
ENDIF()
IF(NOT DEFINED ANDROID_TOOLCHAIN)
SET(ANDROID_TOOLCHAIN clang)
ENDIF()
IF(NOT DEFINED ANDROID_ABI)
SET(ANDROID_ABI "armeabi-v7a")
ENDIF()
@ -82,6 +87,7 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
"${CMAKE_VERSION}), when cross-compiling for Android.")
IF(ANDROID_STANDALONE_TOOLCHAIN)
# Use standalone toolchain
SET(CMAKE_SYSROOT "${ANDROID_STANDALONE_TOOLCHAIN}/sysroot")
IF(NOT CMAKE_SYSTEM_VERSION)
@ -96,26 +102,44 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
ENDIF()
# Toolchain
SET(ANDROID_TOOLCHAIN "gcc")
SET(ANDROID_TOOLCHAIN_ROOT ${ANDROID_STANDALONE_TOOLCHAIN})
IF(ANDROID_ABI MATCHES "^armeabi(-v7a)?$")
SET(ANDROID_TOOLCHAIN_NAME arm-linux-androideabi)
IF(ANDROID_ABI STREQUAL "armeabi")
SET(CMAKE_SYSTEM_PROCESSOR armv5te)
ELSEIF(ANDROID_ABI STREQUAL "armeabi-v7a")
SET(CMAKE_SYSTEM_PROCESSOR armv7-a)
ENDIF()
ENDIF()
IF(ANDROID_ABI STREQUAL "arm64-v8a")
SET(ANDROID_TOOLCHAIN_NAME aarch64-linux-android)
SET(CMAKE_SYSTEM_PROCESSOR aarch64)
ELSE(ANDROID_NDK)
# TODO: use android ndk
ENDIF()
IF(ANDROID_ABI MATCHES "^armeabi(-v7a)?$")
SET(ANDROID_TOOLCHAIN_NAME arm-linux-androideabi)
IF(ANDROID_ABI STREQUAL "armeabi")
SET(CMAKE_SYSTEM_PROCESSOR armv5te)
SET(ANDROID_CLANG_TRIPLE armv5te-none-linux-androideabi)
ELSEIF(ANDROID_ABI STREQUAL "armeabi-v7a")
SET(CMAKE_SYSTEM_PROCESSOR armv7-a)
SET(ANDROID_CLANG_TRIPLE armv7-none-linux-androideabi)
ENDIF()
SET(ANDROID_TOOLCHAIN_PREFIX "${ANDROID_TOOLCHAIN_ROOT}/bin/${ANDROID_TOOLCHAIN_NAME}-")
ELSEIF(ANDROID_ABI STREQUAL "arm64-v8a")
SET(ANDROID_TOOLCHAIN_NAME aarch64-linux-android)
SET(CMAKE_SYSTEM_PROCESSOR aarch64)
SET(ANDROID_CLANG_TRIPLE aarch64-none-linux-android)
ELSE()
MESSAGE(FATAL_ERROR "Invalid Android ABI: ${ANDROID_ABI}.")
ENDIF()
SET(ANDROID_TOOLCHAIN_PREFIX "${ANDROID_TOOLCHAIN_ROOT}/bin/${ANDROID_TOOLCHAIN_NAME}-")
IF(ANDROID_TOOLCHAIN STREQUAL clang)
SET(ANDROID_C_COMPILER_NAME clang)
SET(ANDROID_CXX_COMPILER_NAME clang++)
SET(CMAKE_C_COMPILER_TARGET ${ANDROID_CLANG_TRIPLE})
SET(CMAKE_CXX_COMPILER_TARGET ${ANDROID_CLANG_TRIPLE})
ELSEIF(ANDROID_TOOLCHAIN STREQUAL gcc)
SET(ANDROID_C_COMPILER_NAME gcc)
SET(ANDROID_CXX_COMPILER_NAME g++)
ELSE()
MESSAGE(FATAL_ERROR "Invalid Android toolchain: ${ANDROID_TOOLCHAIN}")
ENDIF()
# C compiler
IF(NOT CMAKE_C_COMPILER)
SET(ANDROID_C_COMPILER "${ANDROID_TOOLCHAIN_PREFIX}gcc")
SET(ANDROID_C_COMPILER "${ANDROID_TOOLCHAIN_PREFIX}${ANDROID_C_COMPILER_NAME}")
ELSE()
GET_FILENAME_COMPONENT(ANDROID_C_COMPILER ${CMAKE_C_COMPILER} PROGRAM)
ENDIF()
@ -125,7 +149,7 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
# CXX compiler
IF(NOT CMAKE_CXX_COMPILER)
SET(ANDROID_CXX_COMPILER "${ANDROID_TOOLCHAIN_PREFIX}g++")
SET(ANDROID_CXX_COMPILER "${ANDROID_TOOLCHAIN_PREFIX}${ANDROID_CXX_COMPILER_NAME}")
ELSE()
GET_FILENAME_COMPONENT(ANDROID_CXX_COMPILER ${CMAKE_CXX_COMPILER} PROGRAM)
ENDIF()
@ -137,7 +161,7 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
SET(CMAKE_CXX_COMPILER ${ANDROID_CXX_COMPILER} CACHE PATH "CXX compiler" FORCE)
# Toolchain and ABI specific flags.
SET(ANDROID_COMPILER_FLAGS "-ffunction-sections -fdata-sections -finline-limit=64")
SET(ANDROID_COMPILER_FLAGS "-ffunction-sections -fdata-sections")
SET(ANDROID_LINKER_FLAGS "-Wl,--gc-sections")
IF(ANDROID_ABI STREQUAL "armeabi")
@ -145,8 +169,7 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
-march=armv5te
-mtune=xscale
-msoft-float)
ENDIF()
IF(ANDROID_ABI STREQUAL "armeabi-v7a")
ELSEIF(ANDROID_ABI STREQUAL "armeabi-v7a")
LIST(APPEND ANDROID_COMPILER_FLAGS
-march=armv7-a
-mfloat-abi=softfp)
@ -156,6 +179,8 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
LIST(APPEND ANDROID_COMPILER_FLAGS -mfpu=vfpv3-d16)
ENDIF()
LIST(APPEND ANDROID_LINKER_FLAGS -Wl,--fix-cortex-a8)
ELSEIF(ANDROID_ABI STREQUAL "arm64-v8a")
LIST(APPEND ANDROID_COMPILER_FLAGS -march=armv8-a)
ENDIF()
IF(ANDROID_ABI MATCHES "^armeabi(-v7a)?$")
@ -164,10 +189,18 @@ IF("${CMAKE_VERSION}" VERSION_LESS "3.7.0")
ELSE()
LIST(APPEND ANDROID_COMPILER_FLAGS -mthumb)
ENDIF()
IF(ANDROID_TOOLCHAIN STREQUAL clang)
# Disable integrated-as for better compatibility.
LIST(APPEND ANDROID_COMPILER_FLAGS -fno-integrated-as)
ENDIF()
ENDIF()
IF(ANDROID_ABI STREQUAL "arm64-v8a")
LIST(APPEND ANDROID_COMPILER_FLAGS -march=armv8-a)
IF(ANDROID_TOOLCHAIN STREQUAL clang)
# CMake automatically forwards all compiler flags to the linker,
# and clang doesn't like having -Wa flags being used for linking.
# To prevent CMake from doing this would require meddling with
# the CMAKE_<LANG>_COMPILE_OBJECT rules, which would get quite messy.
LIST(APPEND ANDROID_LINKER_FLAGS -Qunused-arguments)
ENDIF()
STRING(REPLACE ";" " " ANDROID_COMPILER_FLAGS "${ANDROID_COMPILER_FLAGS}")

@ -18,9 +18,9 @@ SET(GFLAGS_SOURCES_DIR ${THIRD_PARTY_PATH}/gflags)
SET(GFLAGS_INSTALL_DIR ${THIRD_PARTY_PATH}/install/gflags)
SET(GFLAGS_INCLUDE_DIR "${GFLAGS_INSTALL_DIR}/include" CACHE PATH "gflags include directory." FORCE)
IF(WIN32)
set(GFLAGS_LIBRARIES "${GFLAGS_INSTALL_DIR}/lib/gflags.lib" CACHE FILEPATH "GFLAGS_LIBRARIES" FORCE)
set(GFLAGS_LIBRARIES "${GFLAGS_INSTALL_DIR}/lib/gflags.lib" CACHE FILEPATH "GFLAGS_LIBRARIES" FORCE)
ELSE(WIN32)
set(GFLAGS_LIBRARIES "${GFLAGS_INSTALL_DIR}/lib/libgflags.a" CACHE FILEPATH "GFLAGS_LIBRARIES" FORCE)
set(GFLAGS_LIBRARIES "${GFLAGS_INSTALL_DIR}/lib/libgflags.a" CACHE FILEPATH "GFLAGS_LIBRARIES" FORCE)
ENDIF(WIN32)
INCLUDE_DIRECTORIES(${GFLAGS_INCLUDE_DIR})
@ -56,3 +56,12 @@ SET_PROPERTY(TARGET gflags PROPERTY IMPORTED_LOCATION ${GFLAGS_LIBRARIES})
ADD_DEPENDENCIES(gflags extern_gflags)
LIST(APPEND external_project_dependencies gflags)
IF(WITH_C_API)
INSTALL(DIRECTORY ${GFLAGS_INCLUDE_DIR} DESTINATION third_party/gflags)
IF(ANDROID)
INSTALL(FILES ${GFLAGS_LIBRARIES} DESTINATION third_party/gflags/lib/${ANDROID_ABI})
ELSE()
INSTALL(FILES ${GFLAGS_LIBRARIES} DESTINATION third_party/gflags/lib)
ENDIF()
ENDIF()

@ -19,9 +19,9 @@ SET(GLOG_INSTALL_DIR ${THIRD_PARTY_PATH}/install/glog)
SET(GLOG_INCLUDE_DIR "${GLOG_INSTALL_DIR}/include" CACHE PATH "glog include directory." FORCE)
IF(WIN32)
SET(GLOG_LIBRARIES "${GLOG_INSTALL_DIR}/lib/libglog.lib" CACHE FILEPATH "glog library." FORCE)
SET(GLOG_LIBRARIES "${GLOG_INSTALL_DIR}/lib/libglog.lib" CACHE FILEPATH "glog library." FORCE)
ELSE(WIN32)
SET(GLOG_LIBRARIES "${GLOG_INSTALL_DIR}/lib/libglog.a" CACHE FILEPATH "glog library." FORCE)
SET(GLOG_LIBRARIES "${GLOG_INSTALL_DIR}/lib/libglog.a" CACHE FILEPATH "glog library." FORCE)
ENDIF(WIN32)
INCLUDE_DIRECTORIES(${GLOG_INCLUDE_DIR})
@ -56,3 +56,12 @@ ADD_DEPENDENCIES(glog extern_glog gflags)
LINK_LIBRARIES(glog gflags)
LIST(APPEND external_project_dependencies glog)
IF(WITH_C_API)
INSTALL(DIRECTORY ${GLOG_INCLUDE_DIR} DESTINATION third_party/glog)
IF(ANDROID)
INSTALL(FILES ${GLOG_LIBRARIES} DESTINATION third_party/glog/lib/${ANDROID_ABI})
ELSE()
INSTALL(FILES ${GLOG_LIBRARIES} DESTINATION third_party/glog/lib)
ENDIF()
ENDIF()

@ -12,6 +12,10 @@
# See the License for the specific language governing permissions and
# limitations under the License.
IF(USE_EIGEN_FOR_BLAS)
return()
ENDIF(USE_EIGEN_FOR_BLAS)
INCLUDE(cblas)
IF(NOT ${CBLAS_FOUND})
@ -69,6 +73,26 @@ IF(NOT ${CBLAS_FOUND})
UPDATE_COMMAND ""
CONFIGURE_COMMAND ""
)
IF(WITH_C_API)
INSTALL(DIRECTORY ${CBLAS_INC_DIR} DESTINATION third_party/openblas)
# Because libopenblas.a is a symbolic link of another library, thus need to
# install the whole directory.
IF(ANDROID)
SET(TMP_INSTALL_DIR third_party/openblas/lib/${ANDROID_ABI})
ELSE()
SET(TMP_INSTALL_DIR third_party/openblas/lib)
ENDIF()
INSTALL(CODE "execute_process(
COMMAND ${CMAKE_COMMAND} -E copy_directory ${CBLAS_INSTALL_DIR}/lib
destination ${CMAKE_INSTALL_PREFIX}/${TMP_INSTALL_DIR}
)"
)
INSTALL(CODE "MESSAGE(STATUS \"Installing: \"
\"${CBLAS_INSTALL_DIR}/lib -> ${CMAKE_INSTALL_PREFIX}/${TMP_INSTALL_DIR}\"
)"
)
ENDIF()
ENDIF(NOT ${CBLAS_FOUND})
MESSAGE(STATUS "BLAS library: ${CBLAS_LIBRARIES}")

@ -223,6 +223,15 @@ IF(NOT PROTOBUF_FOUND)
SET(PROTOBUF_PROTOC_LIBRARY ${extern_protobuf_PROTOC_LIBRARY}
CACHE FILEPATH "protoc library." FORCE)
IF(WITH_C_API)
INSTALL(DIRECTORY ${PROTOBUF_INCLUDE_DIR} DESTINATION third_party/protobuf)
IF(ANDROID)
INSTALL(FILES ${PROTOBUF_LIBRARY} DESTINATION third_party/protobuf/lib/${ANDROID_ABI})
ELSE()
INSTALL(FILES ${PROTOBUF_LIBRARY} DESTINATION third_party/protobuf/lib)
ENDIF()
ENDIF()
IF(CMAKE_CROSSCOMPILING)
PROMPT_PROTOBUF_LIB(protobuf_host extern_protobuf)
ELSE()

@ -49,3 +49,12 @@ ExternalProject_Add(
)
LIST(APPEND external_project_dependencies zlib)
IF(WITH_C_API)
INSTALL(DIRECTORY ${ZLIB_INCLUDE_DIR} DESTINATION third_party/zlib)
IF(ANDROID)
INSTALL(FILES ${ZLIB_LIBRARIES} DESTINATION third_party/zlib/lib/${ANDROID_ABI})
ELSE()
INSTALL(FILES ${ZLIB_LIBRARIES} DESTINATION third_party/zlib/lib)
ENDIF()
ENDIF()

@ -86,12 +86,13 @@ def layer.fc(X):
We'd like to have Python bindings to operators in package `paddle.operator`, and Python compositions of operators in package `paddle.layer`. So we have the following concepts in above illustrative example:
```
| C++ functions/functors | mul | add | | |
|------------------------|--------------|--------------|-------------|----------|
| C++ operator class | mulOp | addOp | FCOp | |
| Python binding | operator.mul | operator.add | operator.fc | |
| Python function | | | | layer.fc |
```
This is how we differentiate layer and operators in PaddlePaddle:

@ -1,4 +1,4 @@
# Design Doc: Computations as Graphs
# Design Doc: Computations as a Graph
A primary goal of the refactorization of PaddlePaddle is a more flexible representation of deep learning computation, in particular, a graph of operators and variables, instead of sequences of layers as before.
@ -8,6 +8,8 @@ This document explains that the construction of a graph as three steps:
- construct the backward part
- construct the optimization part
## The Construction of a Graph
Let us take the problem of image classification as a simple example. The application program that trains the model looks like:
```python
@ -25,7 +27,9 @@ The first four lines of above program build the forward part of the graph.
![](images/graph_construction_example_forward_only.png)
In particular, the first line `x = layer.data("images")` creates variable x and a Feed operator that copies a column from the minibatch to x. `y = layer.fc(x)` creates not only the FC operator and output variable y, but also two parameters, W and b.
In particular, the first line `x = layer.data("images")` creates variable x and a Feed operator that copies a column from the minibatch to x. `y = layer.fc(x)` creates not only the FC operator and output variable y, but also two parameters, W and b, and the initialization operators.
Initialization operators are kind of "run-once" operators -- the `Run` method increments a class data member counter so to run at most once. By doing so, a parameter wouldn't be initialized repeatedly, say, in every minibatch.
In this example, all operators are created as `OpDesc` protobuf messages, and all variables are `VarDesc`. These protobuf messages are saved in a `BlockDesc` protobuf message.
@ -49,3 +53,18 @@ According to the chain rule of gradient computation, `ConstructBackwardGraph` wo
For each parameter, like W and b created by `layer.fc`, marked as double circles in above graphs, `ConstructOptimizationGraph` creates an optimization operator to apply its gradient. Here results in the complete graph:
![](images/graph_construction_example_all.png)
## Block and Graph
The word block and graph are interchangable in the desgin of PaddlePaddle. A [Block[(https://github.com/PaddlePaddle/Paddle/pull/3708) is a metaphore of the code and local variables in a pair of curly braces in programming languages, where operators are like statements or instructions. A graph of operators and variables is a representation of the block.
A Block keeps operators in an array `BlockDesc::ops`
```protobuf
message BlockDesc {
repeated OpDesc ops = 1;
repeated VarDesc vars = 2;
}
```
in the order that there appear in user programs, like the Python program at the beginning of this article. We can imagine that in `ops`, we have some forward operators, followed by some gradient operators, and then some optimization operators.

@ -1,22 +1,4 @@
IfOp should have only one branch. An IfOp operator takes a `cond` variable whose value must be a vector of N boolean elements. Its return value has M (M<=N) instances, each corresponds to a true element in `cond`.
```python
import paddle as pd
x = var()
y = var()
cond = var()
b = pd.create_ifop(inputs=[x], output_num=1)
with b.true_block():
x = b.inputs(0)
z = operator.add(x, y)
b.set_output(0, operator.softmax(z))
out = b(cond)
```
If we want the output still has N instances, we can use IfElseOp with a default value, whose minibatch size must be N:
IfOp should have only one branch. An IfOp operator takes a `cond` variable whose value must be a vector of N boolean elements. Its return value has N instances. If cond[i] == True, input instance input[i] will go through true_block() and generate output[i]; otherwise it will produce output from false_bloack().
```python
import paddle as pd
@ -39,7 +21,7 @@ with b.false_block():
out = b(cond)
```
If only true_block is set in an IfElseOp, we can have a default value for false as:
If only true_block is set in an IfElseOp, a special case is that we can have a default value for false as:
```python
import paddle as pd

@ -2,6 +2,8 @@ digraph ImageClassificationGraph {
///////// The forward part /////////
FeedX [label="Feed", color=blue, shape=box];
FeedY [label="Feed", color=blue, shape=box];
InitW [label="Init", color=blue, shape=diamond];
Initb [label="Init", color=blue, shape=diamond];
FC [label="FC", color=blue, shape=box];
MSE [label="MSE", color=blue, shape=box];
@ -14,6 +16,8 @@ digraph ImageClassificationGraph {
FeedX -> x -> FC -> y -> MSE -> cost [color=blue];
FeedY -> l [color=blue];
InitW -> W [color=blue];
Initb -> b [color=blue];
W -> FC [color=blue];
b -> FC [color=blue];
l -> MSE [color=blue];

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@ -0,0 +1,106 @@
# Design Doc: Operation Graph Based Parameter Server
## Abstract
We propose an approach to implement the parameter server. In this
approach, there is no fundamental difference between the trainer and
the parameter server: they both run subgraphs, but subgraphs of
different purposes.
## Background
The previous implementations of the parameter server does not run a
subgraph. parameter initialization, optimizer computation, network
communication and checkpointing are implemented twice on both the
trainer and the parameter server.
It would be great if we can write code once and use them on both the
trainer and the parameter server: reduces code duplication and
improves extensibility. Given that after the current refactor, we are
representing everything as a computing graph on the
trainer. Representing everything as a computing graph on the parameter
server becomes a natural extension.
## Design
### Graph Converter
The *graph converter* converts the user-defined operation (OP) graph
into subgraphs to be scheduled on different nodes with the following
steps:
1. OP placement: the OPs will be placed on different nodes according
to heuristic that minimizes estimated total computation
time. Currently we will use a simple heuristic that puts parameter
varable on parameter server workers and everything else on trainer
workers.
1. Add communication OPs to enable the communication between nodes.
We will need these OPs: *Send*, *Recv*, *Enqueue*, *Dequeue*.
Below is an example of converting the user defined graph to the
subgraphs for the trainer and the parameter server:
<img src="src/local-graph.png" width="300"/>
After converting:
<img src="src/dist-graph.png" width="700"/>
1. The parameter variable W and it's optimizer subgraph are placed on the parameter server.
1. Operators are added to the subgraphs.
- *Send* sends data to the connected *Recv* operator. The
scheduler on the receive node will only schedule *Recv* operator
to run when the *Send* operator has ran (the *Send* OP will mark
the *Recv* OP runnable automatically).
- *Enueue* enqueues the input variable, it can block until space
become available in the queue.
- *Dequeue* outputs configurable numbers of tensors from the
queue. It will block until the queue have the required number of
tensors.
### Benefits
- Model parallelism become easier to implement: it's an extension to
the trainer - parameter server approach. we already have the
communication OPs, but need to extend the graph converter's
placement functionality.
- User-defined optimizer is easier to add - user can now express it as
a subgraph.
- No more duplication logic inside the trainer and the parameter
server mentioned in the background section.
### Challenges
- It might be hard for the graph converter to cut a general graph
(without any hint for which subgraph is the optimizer). We may need
to label which subgraph inside the OP graph is the optimizer.
- It's important to balance the parameter shards of on multiple
parameter server. If a single parameter is very big (some
word-embedding, fully connected, softmax layer), we need to
automatically partition the single parameter onto different
parameter servers when possible (only element-wise optimizer depends
on the parameter variable).
### Discussion
- In the "Aync SGD" figure, the "W" variable on the parameter server
could be read and wrote concurrently, what is our locking strategy?
E.g., each variable have a lock cpp method to be invoked by every
OP, or, have a lock OP.
- Can the Enqueue OP be implemented under our current tensor design
(puts the input tensor into the queue tensor)?
- *Dequeue* OP will have variable numbers of output (depends on the
`min_count` attribute), does our current design support it? (similar
question for the *Add* OP)
### References:
[1] [TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems](https://static.googleusercontent.com/media/research.google.com/en//pubs/archive/45166.pdf)

@ -0,0 +1,56 @@
digraph G {
rnn [label="1-th level RNN" shape=box]
subgraph cluster0 {
label = "time step 0"
sent0 [label="sentence"]
sent1 [label="sentence"]
rnn1 [label="2-th level RNN" shape=box]
sent0 -> rnn1
sent1 -> rnn1
}
subgraph cluster1 {
label = "time step 1"
sent2 [label="sentence"]
sent3 [label="sentence"]
rnn2 [label="2-th level RNN" shape=box]
sent2 -> rnn2
sent3 -> rnn2
}
subgraph cluster2 {
label = "time step 2"
sent4 [label="sentence"]
sent5 [label="sentence"]
rnn3 [label="2-th level RNN" shape=box]
sent4 -> rnn3
sent5 -> rnn3
}
para0 [label="paragraph info 0"]
para1 [label="paragraph info 1"]
para2 [label="paragraph info 2"]
rnn1 -> para0
rnn2 -> para1
rnn3 -> para2
para0 -> rnn
para1 -> rnn
para2 -> rnn
chapter [label="chapter info"]
rnn -> chapter
}

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@ -0,0 +1,87 @@
digraph G {
label = "simple RNN implementation"
ranksep=2;
//graph [nodesep=1, ranksep=1];
node[nodesep=1]
subgraph cluster0 {
label = "global scope"
rankdir = TB
W
boot_memory
input
output
}
subgraph cluster1 {
label = "step-scope 0"
rankdir = TB
memory0[label="memory"]
prememory0[label="pre-memory"]
step_input0[label="step input"]
step_output0[label="step output"]
}
subgraph cluster2 {
label = "step-scope 1"
rankdir = TB
memory1[label="memory"]
prememory1[label="pre-memory"]
step_input1[label="step input"]
step_output1[label="step output"]
}
subgraph cluster3 {
label = "step-scope 2"
rankdir = TB
memory2[label="memory"]
prememory2[label="pre-memory"]
step_input2[label="step input"]
step_output2[label="step output"]
}
stepnet [shape=box]
stepnet0 [shape=box, style=dashed]
stepnet1 [shape=box, style=dashed]
stepnet2 [shape=box, style=dashed]
edge[color=blue]
boot_memory -> prememory0 [label="init" color="blue"]
memory0 -> prememory1 [label="copy/reference" color="blue"]
memory1 -> prememory2 [label="copy/reference" color="blue"]
edge[color=black]
W -> stepnet0[constraint=false, style=dashed]
W -> stepnet1[constraint=false, style=dashed]
W -> stepnet2[constraint=false, style=dashed]
memory0 -> stepnet0[style=dashed]
prememory0 -> stepnet0 -> step_output0[style=dashed]
memory1 -> stepnet1[style=dashed]
prememory1 -> stepnet1 -> step_output1[style=dashed]
memory2 -> stepnet2[style=dashed]
prememory2 -> stepnet2 -> step_output2[style=dashed]
input -> step_input0
input -> step_input1
input -> step_input2
step_input0 -> stepnet0 [style=dashed]
step_input1 -> stepnet1[style=dashed]
step_input2 -> stepnet2[style=dashed]
step_output0 -> output
step_output1 -> output
step_output2 -> output
stepnet0 -> stepnet[style=dashed]
stepnet1 -> stepnet[style=dashed]
stepnet2 -> stepnet[style=dashed]
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@ -0,0 +1,75 @@
digraph G {
chapter [label="chapter"]
subgraph cluster0 {
label = "paragraph 0"
top_rnn0[label="top rnn step 0" shape=box]
p0 [label="paragraph 0"]
p1 [label="paragraph 1"]
}
subgraph cluster1{
label = "paragraph 1"
top_rnn1[label="top rnn step 1" shape=box]
p2 [label="paragraph 0"]
p3 [label="paragraph 1"]
}
subgraph cluster_p0 {
label = "sentence 0"
low_rnn0 [label="low rnn step 0" shape=box]
s00 [label="sentence 0"]
s01 [label="sentence 1"]
low_rnn0 -> s00
low_rnn0 -> s01
}
subgraph cluster_p1 {
label = "sentence 1"
low_rnn1 [label="low rnn step 1" shape=box]
s10 [label="sentence 0"]
s11 [label="sentence 1"]
low_rnn1 -> s10
low_rnn1 -> s11
}
subgraph cluster_p2 {
label = "sentence 1"
low_rnn2 [label="low rnn step 0" shape=box]
s20 [label="sentence 0"]
s21 [label="sentence 1"]
low_rnn2 -> s20
low_rnn2 -> s21
}
subgraph cluster_p3 {
label = "sentence 1"
low_rnn3 [label="low rnn step 1" shape=box]
s30 [label="sentence 0"]
s31 [label="sentence 1"]
low_rnn3 -> s30
low_rnn3 -> s31
}
chapter -> top_rnn0
chapter -> top_rnn1
top_rnn0 -> p0
top_rnn0 -> p1
top_rnn1 -> p2
top_rnn1 -> p3
p0 -> low_rnn0
p1 -> low_rnn1
p2 -> low_rnn2
p3 -> low_rnn3
}

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