Merge remote-tracking branch 'ups/develop' into nlp

wangkuiyi-patch-1
tensor-tang 7 years ago
commit 06adccf6eb

@ -19,7 +19,7 @@ BasedOnStyle: Google
IndentWidth: 2
TabWidth: 2
ContinuationIndentWidth: 4
AccessModifierOffset: -2 # The private/protected/public has no indent in class
AccessModifierOffset: -1 # The private/protected/public has no indent in class
Standard: Cpp11
AllowAllParametersOfDeclarationOnNextLine: true
BinPackParameters: false

@ -34,6 +34,14 @@ repos:
entry: bash ./tools/codestyle/cpplint_pre_commit.hook
language: system
files: \.(c|cc|cxx|cpp|cu|h|hpp|hxx)$
- repo: local
hooks:
- id: pylint-doc-string
name: pylint
description: Check python docstring style using docstring_checker.
entry: bash ./tools/codestyle/pylint_pre_commit.hook
language: system
files: \.(py)$
- repo: https://github.com/PaddlePaddle/pre-commit-golang
sha: 8337620115c25ff8333f1b1a493bd031049bd7c0
hooks:

@ -18,6 +18,8 @@ env:
addons:
ssh_known_hosts: 13.229.163.131
before_install:
# For pylint dockstring checker
- sudo pip install pylint pytest astroid isort
- |
function timeout() { perl -e 'alarm shift; exec @ARGV' "$@"; }
script:

@ -4,6 +4,7 @@
| backyes | Yan-Fei Wang |
| baiyfbupt | Yi-Fan Bai |
| beckett1124 | Bin Qi |
| ChengduoZH | Cheng-Duo Zhao|
| chengxiaohua1105 | Xiao-Hua Cheng |
| cxwangyi, yiwangbaidu, wangkuiyi | Yi Wang |
| cxysteven | Xing-Yi Cheng |

@ -57,7 +57,10 @@ option(GLIDE_INSTALL "Download and install go dependencies " ON)
option(USE_NNPACK "Compile PaddlePaddle with NNPACK library" OFF)
option(WITH_DISTRIBUTE "Compile with grpc distributed support" OFF)
option(USE_EIGEN_FOR_BLAS "Use matrix multiplication in Eigen" OFF)
option(EIGEN_USE_THREADS "Compile with multi-threaded Eigen" OFF)
option(WITH_ARM_FP16 "Use half precision support on armv8.2-a cpu" OFF)
option(WITH_FAST_BUNDLE_TEST "Bundle tests that can be run in a single process together to reduce launch overhead" OFF)
option(WITH_CONTRIB "Compile the third-party contributation" OFF)
# CMAKE_BUILD_TYPE
if(NOT CMAKE_BUILD_TYPE)
@ -202,7 +205,7 @@ endif(USE_NNPACK)
add_subdirectory(proto)
if(NOT MOBILE_INFERENCE)
if(NOT MOBILE_INFERENCE AND NOT WITH_FLUID_ONLY)
# "add_subdirectory(go)" should be placed after the following loine,
# because it depends on paddle/optimizer.
add_subdirectory(paddle/optimizer)
@ -230,3 +233,7 @@ if(WITH_DOC)
find_python_module(recommonmark REQUIRED)
add_subdirectory(doc)
endif()
if (WITH_CONTRIB)
add_subdirectory(paddle/contrib)
endif()

@ -58,6 +58,8 @@ PaddlePaddle uses this [Git branching model](http://nvie.com/posts/a-successful-
create mode 100644 233
```
NOTE: The `yapf` installed by `pip install pre-commit` and `conda install -c conda-forge pre-commit` is slightly different. Paddle developers use `pip install pre-commit`.
1. Build and test
Users can build PaddlePaddle natively on Linux and Mac OS X. But to unify the building environment and to make it easy for debugging, the recommended way is [using Docker](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/howto/dev/build_en.md).

@ -29,7 +29,7 @@ RUN apt-get update && \
wget unzip unrar tar xz-utils bzip2 gzip coreutils ntp \
curl sed grep graphviz libjpeg-dev zlib1g-dev \
python-matplotlib gcc-4.8 g++-4.8 \
automake locales clang-format swig doxygen cmake \
automake locales clang-format swig cmake \
liblapack-dev liblapacke-dev \
clang-3.8 llvm-3.8 libclang-3.8-dev \
net-tools libtool ccache && \
@ -79,6 +79,9 @@ RUN pip install pre-commit 'ipython==5.3.0' && \
pip install 'ipykernel==4.6.0' 'jupyter==1.0.0' && \
pip install opencv-python
#For docstring checker
RUN pip install pylint pytest astroid isort
COPY ./python/requirements.txt /root/
RUN pip install -r /root/requirements.txt
@ -101,6 +104,3 @@ RUN echo 'root:root' | chpasswd
RUN sed -ri 's/^PermitRootLogin\s+.*/PermitRootLogin yes/' /etc/ssh/sshd_config
RUN sed -ri 's/UsePAM yes/#UsePAM yes/g' /etc/ssh/sshd_config
EXPOSE 22
# development image default do build work
CMD ["bash", "/paddle/paddle/scripts/docker/build.sh"]

@ -40,5 +40,3 @@ RUN mkdir -p ${ANDROID_TOOLCHAINS_DIR} && \
unzip -q android-ndk-r14b-linux-x86_64.zip && \
mv android-ndk-r14b ${ANDROID_NDK_HOME} && \
rm -rf /opt/android-ndk-tmp
CMD ["bash", "/paddle/paddle/scripts/docker/build_android.sh"]

@ -1,196 +0,0 @@
# Cluster Training Benchmark
## Setup
- Platform
- Kubernetes: v1.6.2
- Linux Kernel: v3.10.0
- Resource
- CPU: 10 Cores per Pod
- Memory: 5GB per Pod
- Docker Image
We use different base Docker Image to run the benchmark on Kubernetes:
- PaddlePaddle v2: paddlepaddle/paddle:0.11.0
- PaddlePaddle Fluid: paddlepaddle/paddle:[commit-id]
- TensorFlow: tensorflow/tensorflow:1.5.0-rc0
- Model
vgg16 is used in this benchmark.
## Cases
- Variable
- Batch Size of training data.
- PServer count of the training job.
- The number of trainers.
- Invariant
- The resource of trainer/pserver Pod.
### Measure the Performance for Different Batch Size
- PServer Count: 40
- Trainer Count: 100
- Metrics: mini-batch / sec
<table>
<thead>
<tr>
<th>Batch Size </th>
<th> 32</th>
<th>64</th>
<th>128 </th>
<th>256</th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid</td>
<td>-</td>
<td>- </td>
<td>- </td>
<td>- </td>
</tr>
<tr>
<td>PaddlePaddle v2 </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>- </td>
</tr>
<tr>
<td>TensorFlow </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>- </td>
</tr>
</tbody>
</table>
### Measure the Performance for Different PServer Count
- Trainer Count: 100
- Batch Size: 64
- Metrics: mini-batch / sec
<table>
<thead>
<tr>
<th>PServer Count </th>
<th>10</th>
<th>20</th>
<th>40 </th>
<th>60</th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid</td>
<td>-</td>
<td>- </td>
<td>- </td>
<td>- </td>
</tr>
<tr>
<td>PaddlePaddle v2 </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>- </td>
</tr>
<tr>
<td>TensorFlow </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>- </td>
</tr>
</tbody>
</table>
### Measure Parallel Efficiency By Increasing Trainer Count
- PServer Count: 20
- Batch Size: 64
- Metrics:
$S = \div(T1, TN)$
which S is the ratio of T1 over TN, training time of 1 and N trainers.
The parallel efficiency is:
$E = \div(S, N)$
<table>
<thead>
<tr>
<th>Trainer Counter </th>
<th>1</th>
<th>10</th>
<th>20 </th>
<th>30</th>
<th>40</th>
<th>50</th>
<th>60 </th>
<th>70</th>
<th>80</th>
<th>90</th>
<th>100 </th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid</td>
<td>-</td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>-</td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>-</td>
<td>- </td>
<td>- </td>
</tr>
<tr>
<td>PaddlePaddle v2 </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>-</td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>-</td>
<td>- </td>
<td>- </td>
</tr>
<tr>
<td>TensorFlow </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>-</td>
<td>- </td>
<td>- </td>
<td>- </td>
<td>-</td>
<td>- </td>
<td>- </td>
</tr>
</tbody>
</table>
## Reproduce the benchmark
TODO

@ -1,35 +0,0 @@
FROM nvidia/cuda:8.0-cudnn5-runtime-ubuntu16.04
# you can get mirror list here:
# https://launchpad.net/ubuntu/+archivemirrors
ARG UBUNTU_MIRROR
RUN /bin/bash -c 'if [[ -n ${UBUNTU_MIRROR} ]]; then sed -i 's#http://archive.ubuntu.com/ubuntu#${UBUNTU_MIRROR}#g' /etc/apt/sources.list; fi'
RUN apt-get update && apt-get install -y python python-dev python-pip iputils-ping libgtk2.0-dev
RUN pip install -U kubernetes opencv-python
RUN pip install paddlepaddle
# if network is slowly, you may need to add proxy here.
# ENV https_proxy=
RUN sh -c 'echo "import paddle.v2 as paddle\npaddle.dataset.cifar.train10()" | python'
RUN pip uninstall -y paddlepaddle
# unset proxy if it is setted.
# ENV https_proxy=""
# NOTE: By default CI built wheel packages turn WITH_DISTRIBUTE=OFF,
# so we must build one with distribute support to install in this image.
ADD *.whl /
RUN pip install /*.whl && rm -f /*.whl
ENV LD_LIBRARY_PATH=/usr/local/lib
# tf k8s
RUN pip install tensorflow==1.4.0
ADD tf_k8s /usr/bin
RUN chmod +x /usr/bin/tf_k8s
ADD vgg16_tf.py /workspace/
# below lines may change a lot for debugging
ADD https://raw.githubusercontent.com/PaddlePaddle/cloud/develop/docker/paddle_k8s /usr/bin
ADD https://raw.githubusercontent.com/PaddlePaddle/cloud/develop/docker/k8s_tools.py /root
RUN chmod +x /usr/bin/paddle_k8s
ADD vgg16_fluid.py vgg16_v2.py /workspace/

@ -1,195 +0,0 @@
# Performance for Distributed vgg16
## Test Result
### Hardware Infomation
- CPU: Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz
- cpu MHz : 2101.000
- cache size : 20480 KB
### Blas settings
Setting environment variable: `MKL_NUM_THREADS=1`.
### Single Node Single Thread
- Metrics: samples / sec
<table>
<thead>
<tr>
<th>Batch Size </th>
<th> 32</th>
<th>64</th>
<th>128 </th>
<th>256</th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid</td>
<td> 15.44 </td>
<td> 16.32 </td>
<td> 16.74 </td>
<td> 16.79 </td>
</tr>
<tr>
<td>PaddlePaddle v2 </td>
<td> 15.97 </td>
<td> 17.04 </td>
<td> 17.60 </td>
<td> 17.83 </td>
</tr>
<tr>
<td>TensorFlow </td>
<td> 9.09 </td>
<td> 9.10 </td>
<td> 9.24 </td>
<td> 8.66 </td>
</tr>
</tbody>
</table>
### Different Batch Size
- PServer Count: 10
- Trainer Count: 20
- Metrics: samples / sec
<table>
<thead>
<tr>
<th>Batch Size </th>
<th> 32</th>
<th>64</th>
<th>128 </th>
<th>256</th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid</td>
<td> 190.20 </td>
<td> 222.15 </td>
<td> 247.40 </td>
<td> 258.18 </td>
</tr>
<tr>
<td>PaddlePaddle v2 </td>
<td> 170.96 </td>
<td> 233.71 </td>
<td> 256.14 </td>
<td> 329.23 </td>
</tr>
<tr>
<td>TensorFlow </td>
<td> - </td>
<td> - </td>
<td> - </td>
<td> - </td>
</tr>
</tbody>
</table>
### Accelerate Rate
- Pserver Count: 20
- Batch Size: 128
- Metrics: samples / sec
<table>
<thead>
<tr>
<th>Trainer Count </th>
<th>20</th>
<th>40</th>
<th>80</th>
<th>100</th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid</td>
<td> 263.29 (78.64%) </td>
<td> 518.80 (77.47%) </td>
<td> 836.26 (62.44%) </td>
<td> 1019.29 (60.89%) </td>
</tr>
<tr>
<td>PaddlePaddle v2 (need more tests) </td>
<td> 326.85 (92.85%) </td>
<td> 534.58 (75.93%) </td>
<td> 853.30 (60.60%) </td>
<td> 1041.99 (59.20%) </td>
</tr>
<tr>
<td>TensorFlow </td>
<td> - </td>
<td> - </td>
<td> - </td>
<td> - </td>
</tr>
</tbody>
</table>
### Different Pserver Count
- Trainer Count: 60
- Batch Size: 128
- Metrics: samples/ sec
<table>
<thead>
<tr>
<th>PServer Count </th>
<th>3</th>
<th>6</th>
<th>10</th>
<th>20</th>
</tr>
</thead>
<tbody>
<tr>
<td> PaddlePaddle Fluid(should fix in next PR) </td>
<td> 589.1 </td>
<td> 592.6 </td>
<td> 656.4 </td>
<td> 655.8 </td>
</tr>
<tr>
<td>PaddlePaddle v2 (need more tests) </td>
<td> 593.4 </td>
<td> 791.3 </td>
<td> 729.7 </td>
<td> 821.7 </td>
</tr>
<tr>
<td>TensorFlow </td>
<td> - </td>
<td> - </td>
<td> - </td>
<td> - </td>
</tr>
</tbody>
</table>
*The performance gap between Fuild and v2 comes from the network interference.*
## Steps to Run the Performance Test
1. You must re-compile PaddlePaddle and enable `-DWITH_DISTRIBUTE` to build PaddlePaddle with distributed support.
1. When the build finishes, copy the output `whl` package located under `build/python/dist` to current directory.
1. Run `docker build -t [image:tag] .` to build the docker image and run `docker push [image:tag]` to push the image to reponsitory so kubernetes can find it.
1. Run `kubectl create -f pserver.yaml && kubectl create -f trainer.yaml` to start the job on your kubernetes cluster (you must configure the `kubectl` client before this step).
1. Run `kubectl get po` to get running pods, and run `kubectl logs [podID]` to fetch the pod log of pservers and trainers.
Check the logs for the distributed training progress and analyze the performance.
## Enable Verbos Logs
Edit `pserver.yaml` and `trainer.yaml` and add an environment variable `GLOG_v=3` and `GLOG_logtostderr=1` to see what happend in detail.

@ -1,72 +0,0 @@
apiVersion: extensions/v1beta1
kind: ReplicaSet
metadata:
name: vgg16job-pserver
spec:
replicas: 10
template:
metadata:
labels:
paddle-job-pserver: vgg16job
spec:
hostNetwork: true
imagePullSecrets:
- name: job-registry-secret
containers:
- name: pserver
image: "registry.baidu.com/paddlepaddle/fluid_benchmark:vgg16"
imagePullPolicy: Always
ports:
- name: jobport-30236
containerPort: 30236
env:
- name: PADDLE_JOB_NAME
value: vgg16job
- name: MKL_NUM_THREADS
value: "1"
- name: TRAINING_ROLE
value: "PSERVER"
- name: TRAINERS
value: "20"
- name: PSERVERS
value: "10"
- name: TOPOLOGY
value: ""
- name: ENTRY
value: "MKL_NUM_THREADS=1 python /workspace/vgg16_fluid.py --local 0"
- name: TRAINER_PACKAGE
value: "/workspace"
- name: PADDLE_INIT_PORT
value: "30236"
- name: PADDLE_INIT_NICS
value: "xgbe0"
- name: PADDLE_INIT_TRAINER_COUNT
value: "1"
- name: PADDLE_INIT_PORTS_NUM
value: "1"
- name: PADDLE_INIT_PORTS_NUM_FOR_SPARSE
value: "1"
- name: PADDLE_INIT_NUM_GRADIENT_SERVERS
value: "20"
- name: PADDLE_INIT_NUM_PASSES
value: "1"
- name: PADDLE_INIT_USE_GPU
value: "0"
- name: LD_LIBRARY_PATH
value: "/usr/local/lib:/usr/local/nvidia/lib64"
- name: NAMESPACE
valueFrom:
fieldRef:
fieldPath: "metadata.namespace"
- name: POD_IP
valueFrom:
fieldRef:
fieldPath: "status.podIP"
command: ["paddle_k8s", "start_fluid"]
resources:
requests:
memory: 10Gi
cpu: 4
limits:
memory: 10Gi
cpu: 4

@ -1,69 +0,0 @@
apiVersion: batch/v1
kind: Job
metadata:
name: vgg16job-trainer
spec:
parallelism: 20
completions: 20
template:
metadata:
labels:
paddle-job: vgg16job
spec:
imagePullSecrets:
- name: job-registry-secret
hostNetwork: true
containers:
- name: trainer
image: "registry.baidu.com/paddlepaddle/fluid_benchmark:vgg16"
imagePullPolicy: Always
command: ["paddle_k8s", "start_fluid"]
env:
- name: PADDLE_JOB_NAME
value: vgg16job
- name: TRAINING_ROLE
value: "TRAINER"
- name: TRAINERS
value: "20"
- name: PSERVERS
value: "10"
- name: TOPOLOGY
value: ""
- name: ENTRY
value: "MKL_NUM_THREADS=1 python /workspace/vgg16_fluid.py --local 0 --batch_size 128"
- name: TRAINER_PACKAGE
value: "/workspace"
- name: PADDLE_INIT_PORT
value: "30236"
- name: PADDLE_INIT_NICS
value: "xgbe0"
- name: PADDLE_INIT_TRAINER_COUNT
value: "1"
- name: PADDLE_INIT_PORTS_NUM
value: "1"
- name: PADDLE_INIT_PORTS_NUM_FOR_SPARSE
value: "1"
- name: PADDLE_INIT_NUM_GRADIENT_SERVERS
value: "20"
- name: PADDLE_INIT_NUM_PASSES
value: "1"
- name: PADDLE_INIT_USE_GPU
value: "0"
- name: LD_LIBRARY_PATH
value: "/usr/local/lib:/usr/local/nvidia/lib64"
- name: NAMESPACE
valueFrom:
fieldRef:
fieldPath: "metadata.namespace"
- name: POD_IP
valueFrom:
fieldRef:
fieldPath: "status.podIP"
resources:
requests:
memory: 40Gi
cpu: 2
limits:
memory: 40Gi
cpu: 2
restartPolicy: Never

@ -1,21 +0,0 @@
#!/bin/bash
# Update to point to the source file.
VGG_SRC="vgg16_fluid.py"
export TRAINING_ROLE=PSERVER
export TRAINERS=2
export POD_IP=127.0.0.1
export PADDLE_INIT_PORT=6174
MKL_NUM_THREADS=1 python -u ${VGG_SRC} --local 0 --ps_host=127.0.0.1:6174 --trainer_hosts=127.0.0.1:6174 &
# Need to wait for the ps to start first.
sleep 10
echo "done start ps"
export TRAINING_ROLE=TRAINER
export TRAINERS=2
export POD_IP=127.0.0.1
export PADDLE_INIT_PORT=6174
CUDA_VISIBLE_DEVICES=4 MKL_NUM_THREADS=1 python -u ${VGG_SRC} --local 0 --ps_host=127.0.0.1:6174 --trainer_hosts=127.0.0.1:6174 --device=GPU --task_index=0 &
CUDA_VISIBLE_DEVICES=5 MKL_NUM_THREADS=1 python -u ${VGG_SRC} --local 0 --ps_host=127.0.0.1:6174 --trainer_hosts=127.0.0.1:6174 --device=GPU --task_index=1 &

@ -1,82 +0,0 @@
#!/bin/bash
check_trainer_ret() {
ret=$1
stdbuf -oL echo "job returned $ret...setting pod return message..."
stdbuf -oL echo "==============================="
if [ $ret -eq 136 ] ; then
echo "Error Arithmetic Operation(Floating Point Exception)" > /dev/termination-log
elif [ $ret -eq 139 ] ; then
echo "Segmentation Fault" > /dev/termination-log
elif [ $ret -eq 1 ] ; then
echo "General Error" > /dev/termination-log
elif [ $ret -eq 134 ] ; then
echo "Program Abort" > /dev/termination-log
fi
stdbuf -oL echo "termination log wroted..."
exit $ret
}
g_pservers=""
g_trainers=""
wait_running_pods(){
pserver_label="tf-job-pserver=${JOB_NAME}"
trainer_label="tf-job-trainer=${JOB_NAME}"
stdbuf -oL python /root/k8s_tools.py wait_pods_running ${pserver_label} ${PSERVERS_NUM}
stdbuf -oL python /root/k8s_tools.py wait_pods_running ${trainer_label} ${TRAINERS_NUM}
g_pservers=$(python /root/k8s_tools.py fetch_endpoints ${pserver_label} ${PORT})
g_trainers=$(python /root/k8s_tools.py fetch_endpoints ${trainer_label} ${PORT})
}
start_tf_pserver(){
wait_running_pods
label="tf-job-pserver=${JOB_NAME}"
pserver_id=$(python /root/k8s_tools.py fetch_id ${label})
cmd="${ENTRY} --ps_hosts=${g_pservers} --worker_hosts=${g_trainers} \
--job_name=${TF_JOB_NAME} --task_index=${pserver_id}"
stdbuf -oL sh -c "cd ${TRAINER_PACKAGE} && ${cmd}"
}
start_tf_trainer(){
wait_running_pods
label="tf-job-trainer=${JOB_NAME}"
trainer_id=$(python /root/k8s_tools.py fetch_id ${label})
cmd="${ENTRY} --ps_hosts=${g_pservers} --worker_hosts=${g_trainers} \
--job_name=${TF_JOB_NAME} --task_index=${trainer_id} --batch_size=${BATCH_SIZE}"
stdbuf -oL sh -c "cd ${TRAINER_PACKAGE} && ${cmd}"
check_trainer_ret $?
}
start_tf(){
if [[ "${TF_JOB_NAME}" == "worker" ]]; then
start_tf_trainer
else
start_tf_pserver
fi
}
usage() {
echo "usage: tf_k8s [<args>]:"
echo " start_tf Start tensorflow jobs"
}
case "$1" in
start_tf)
start_tf
;;
--help)
usage
;;
*)
usage
;;
esac

@ -1,56 +0,0 @@
apiVersion: extensions/v1beta1
kind: ReplicaSet
metadata:
name: vgg16job-tf-pserver
spec:
replicas: 10
template:
metadata:
labels:
tf-job-pserver: vgg16job-tf
spec:
hostNetwork: true
imagePullSecrets:
- name: job-registry-secret
containers:
- name: pserver
image: "registry.baidu.com/paddlepaddle/fluid_benchmark_tf:vgg16"
imagePullPolicy: Always
command: ["tf_k8s", "start_tf"]
ports:
- name: jobport-30236
containerPort: 30236
env:
- name: PORT
value: "32036"
- name: ENTRY
value: "python vgg16_tf.py"
- name: JOB_NAME
value: vgg16job-tf
- name: PSERVERS_NUM
value: "10"
- name: TF_JOB_NAME
value: "ps"
- name: TRAINERS_NUM
value: "20"
- name: BATCH_SIZE
value: "128"
- name: TRAINER_PACKAGE
value: "/workspace"
- name: NUM_PASSES
value: "1"
- name: NAMESPACE
valueFrom:
fieldRef:
fieldPath: "metadata.namespace"
- name: POD_IP
valueFrom:
fieldRef:
fieldPath: "status.podIP"
resources:
requests:
memory: 10Gi
cpu: 4
limits:
memory: 10Gi
cpu: 4

@ -1,58 +0,0 @@
apiVersion: batch/v1
kind: Job
metadata:
name: vgg16job-tf-trainer
spec:
parallelism: 20
completions: 20
template:
metadata:
labels:
tf-job-trainer: vgg16job-tf
spec:
imagePullSecrets:
- name: job-registry-secret
hostNetwork: true
containers:
- name: trainer
image: "registry.baidu.com/paddlepaddle/fluid_benchmark_tf:vgg16"
imagePullPolicy: Always
command: ["tf_k8s", "start_tf"]
ports:
- name: jobport-30236
containerPort: 30236
env:
- name: PORT
value: "32036"
- name: JOB_NAME
value: vgg16job-tf
- name: TF_JOB_NAME
value: "worker"
- name: ENTRY
value: "python vgg16_tf.py"
- name: PSERVERS_NUM
value: "10"
- name: BATCH_SIZE
value: "128"
- name: TRAINERS_NUM
value: "20"
- name: TRAINER_PACKAGE
value: "/workspace"
- name: NUM_PASSES
value: "1"
- name: NAMESPACE
valueFrom:
fieldRef:
fieldPath: "metadata.namespace"
- name: POD_IP
valueFrom:
fieldRef:
fieldPath: "status.podIP"
resources:
requests:
memory: 40Gi
cpu: 2
limits:
memory: 40Gi
cpu: 2
restartPolicy: Never

@ -1,64 +0,0 @@
apiVersion: extensions/v1beta1
kind: ReplicaSet
metadata:
name: vgg16v2job-pserver
spec:
replicas: 10
template:
metadata:
labels:
paddle-job-pserver: vgg16v2job
spec:
hostNetwork: true
imagePullSecrets:
- name: job-registry-secret
containers:
- name: pserver
image: "registry.baidu.com/paddlepaddle/fluid_benchmark:vgg16"
imagePullPolicy: Always
ports:
- name: jobport-30236
containerPort: 30236
env:
- name: PADDLE_JOB_NAME
value: vgg16v2job
- name: TRAINERS
value: "20"
- name: PSERVERS
value: "10"
- name: TOPOLOGY
value: ""
- name: ENTRY
value: "python train.py"
- name: TRAINER_PACKAGE
value: "/workspace"
- name: PADDLE_INIT_PORT
value: "30236"
- name: PADDLE_INIT_NICS
value: "xgbe0"
- name: PADDLE_INIT_TRAINER_COUNT
value: "1"
- name: PADDLE_INIT_PORTS_NUM
value: "1"
- name: PADDLE_INIT_PORTS_NUM_FOR_SPARSE
value: "1"
- name: PADDLE_INIT_NUM_GRADIENT_SERVERS
value: "20"
- name: PADDLE_INIT_NUM_PASSES
value: "1"
- name: PADDLE_INIT_USE_GPU
value: "0"
- name: LD_LIBRARY_PATH
value: "/usr/local/lib:/usr/local/nvidia/lib64"
- name: NAMESPACE
valueFrom:
fieldRef:
fieldPath: "metadata.namespace"
command: ["paddle_k8s", "start_pserver"]
resources:
requests:
memory: 10Gi
cpu: 4
limits:
memory: 10Gi
cpu: 4

@ -1,65 +0,0 @@
apiVersion: batch/v1
kind: Job
metadata:
name: vgg16v2job-trainer
spec:
parallelism: 20
completions: 20
template:
metadata:
labels:
paddle-job: vgg16v2job
spec:
imagePullSecrets:
- name: job-registry-secret
hostNetwork: true
containers:
- name: trainer
image: "registry.baidu.com/paddlepaddle/fluid_benchmark:vgg16"
imagePullPolicy: Always
command: ["paddle_k8s", "start_trainer", "v2"]
env:
- name: PADDLE_JOB_NAME
value: vgg16v2job
- name: BATCH_SIZE
value: "256"
- name: TRAINERS
value: "20"
- name: PSERVERS
value: "10"
- name: TOPOLOGY
value: ""
- name: ENTRY
value: "cd /workspace && MKL_NUM_THREADS=1 python /workspace/vgg16_v2.py"
- name: TRAINER_PACKAGE
value: "/workspace"
- name: PADDLE_INIT_PORT
value: "30236"
- name: PADDLE_INIT_NICS
value: "xgbe0"
- name: PADDLE_INIT_TRAINER_COUNT
value: "1"
- name: PADDLE_INIT_PORTS_NUM
value: "1"
- name: PADDLE_INIT_PORTS_NUM_FOR_SPARSE
value: "1"
- name: PADDLE_INIT_NUM_GRADIENT_SERVERS
value: "20"
- name: PADDLE_INIT_NUM_PASSES
value: "2"
- name: PADDLE_INIT_USE_GPU
value: "0"
- name: LD_LIBRARY_PATH
value: "/usr/local/lib:/usr/local/nvidia/lib64"
- name: NAMESPACE
valueFrom:
fieldRef:
fieldPath: "metadata.namespace"
resources:
requests:
memory: 40Gi
cpu: 2
limits:
memory: 40Gi
cpu: 2
restartPolicy: Never

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

@ -1,154 +0,0 @@
# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
#Licensed under the Apache License, Version 2.0 (the "License");
#you may not use this file except in compliance with the License.
#You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#Unless required by applicable law or agreed to in writing, software
#distributed under the License is distributed on an "AS IS" BASIS,
#WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#See the License for the specific language governing permissions and
#limitations under the License.
import gzip
import paddle.v2.dataset.cifar as cifar
import paddle.v2 as paddle
import time
import os
DATA_DIM = 3 * 32 * 32
CLASS_DIM = 10
BATCH_SIZE = os.getenv("BATCH_SIZE")
if BATCH_SIZE:
BATCH_SIZE = int(BATCH_SIZE)
else:
BATCH_SIZE = 128
print "batch_size", BATCH_SIZE
NODE_COUNT = int(os.getenv("TRAINERS"))
ts = 0
def vgg(input, nums, class_dim):
def conv_block(input, num_filter, groups, num_channels=None):
return paddle.networks.img_conv_group(
input=input,
num_channels=num_channels,
pool_size=2,
pool_stride=2,
conv_num_filter=[num_filter] * groups,
conv_filter_size=3,
conv_act=paddle.activation.Relu(),
pool_type=paddle.pooling.Max())
assert len(nums) == 5
# the channel of input feature is 3
conv1 = conv_block(input, 64, nums[0], 3)
conv2 = conv_block(conv1, 128, nums[1])
conv3 = conv_block(conv2, 256, nums[2])
conv4 = conv_block(conv3, 512, nums[3])
conv5 = conv_block(conv4, 512, nums[4])
fc_dim = 512
fc1 = paddle.layer.fc(input=conv5,
size=fc_dim,
act=paddle.activation.Relu(),
layer_attr=paddle.attr.Extra(drop_rate=0.5))
fc2 = paddle.layer.fc(input=fc1,
size=fc_dim,
act=paddle.activation.Relu(),
layer_attr=paddle.attr.Extra(drop_rate=0.5))
out = paddle.layer.fc(input=fc2,
size=class_dim,
act=paddle.activation.Softmax())
return out
def vgg13(input, class_dim):
nums = [2, 2, 2, 2, 2]
return vgg(input, nums, class_dim)
def vgg16(input, class_dim):
nums = [2, 2, 3, 3, 3]
return vgg(input, nums, class_dim)
def vgg19(input, class_dim):
nums = [2, 2, 4, 4, 4]
return vgg(input, nums, class_dim)
def main():
global ts
paddle.init(use_gpu=False)
image = paddle.layer.data(
name="image", type=paddle.data_type.dense_vector(DATA_DIM))
lbl = paddle.layer.data(
name="label", type=paddle.data_type.integer_value(CLASS_DIM))
extra_layers = None
# NOTE: for v2 distributed training need averaging updates.
learning_rate = 1e-3 / NODE_COUNT
out = vgg16(image, class_dim=CLASS_DIM)
cost = paddle.layer.classification_cost(input=out, label=lbl)
# Create parameters
parameters = paddle.parameters.create(cost)
# Create optimizer
optimizer = paddle.optimizer.Momentum(
momentum=0.9,
regularization=paddle.optimizer.L2Regularization(rate=0.0005 *
BATCH_SIZE),
learning_rate=learning_rate / BATCH_SIZE,
learning_rate_decay_a=0.1,
learning_rate_decay_b=128000 * 35,
learning_rate_schedule="discexp", )
train_reader = paddle.batch(
paddle.reader.shuffle(
cifar.train10(),
# To use other data, replace the above line with:
# reader.train_reader('train.list'),
buf_size=1000),
batch_size=BATCH_SIZE)
test_reader = paddle.batch(
cifar.test10(),
# To use other data, replace the above line with:
# reader.test_reader('val.list'),
batch_size=BATCH_SIZE)
# Create trainer
trainer = paddle.trainer.SGD(cost=cost,
parameters=parameters,
update_equation=optimizer,
extra_layers=extra_layers,
is_local=False)
# End batch and end pass event handler
def event_handler(event):
global ts, ts_pass
if isinstance(event, paddle.event.BeginPass):
ts_pass = time.time()
if isinstance(event, paddle.event.BeginIteration):
ts = time.time()
if isinstance(event, paddle.event.EndIteration):
if event.batch_id % 1 == 0:
print "\nPass %d, Batch %d, Cost %f, %s, spent: %f" % (
event.pass_id, event.batch_id, event.cost, event.metrics,
time.time() - ts)
if isinstance(event, paddle.event.EndPass):
print "Pass %d end, spent: %f" % (event.pass_id,
time.time() - ts_pass)
result = trainer.test(reader=test_reader)
print "\nTest with Pass %d, %s" % (event.pass_id, result.metrics)
trainer.train(
reader=train_reader, num_passes=200, event_handler=event_handler)
if __name__ == '__main__':
main()

@ -0,0 +1,22 @@
FROM nvidia/cuda:9.0-cudnn7-devel-ubuntu16.04
RUN apt-get update && apt-get install -y python python-pip iputils-ping libgtk2.0-dev wget vim net-tools iftop
RUN ln -s /usr/lib/x86_64-linux-gnu/libcudnn.so.7 /usr/lib/libcudnn.so && ln -s /usr/lib/x86_64-linux-gnu/libnccl.so.2 /usr/lib/libnccl.so
RUN pip install -U pip
RUN pip install -U kubernetes opencv-python paddlepaddle
# IMPORTANT:
# Add "ENV http_proxy=http://ip:port" if your download is slow, and don't forget to unset it at runtime.
RUN sh -c 'echo "import paddle.v2 as paddle\npaddle.dataset.cifar.train10()\npaddle.dataset.flowers.fetch()" | python'
RUN sh -c 'echo "import paddle.v2 as paddle\npaddle.dataset.mnist.train()\npaddle.dataset.mnist.test()\npaddle.dataset.imdb.fetch()" | python'
RUN sh -c 'echo "import paddle.v2 as paddle\npaddle.dataset.imikolov.fetch()" | python'
RUN pip uninstall -y paddlepaddle && mkdir /workspace
ADD https://raw.githubusercontent.com/PaddlePaddle/cloud/develop/docker/paddle_k8s /usr/bin
ADD https://raw.githubusercontent.com/PaddlePaddle/cloud/develop/docker/k8s_tools.py /root
ADD *.whl /
RUN pip install /*.whl && rm -f /*.whl && chmod +x /usr/bin/paddle_k8s
ENV LD_LIBRARY_PATH=/usr/local/lib
ADD fluid_benchmark.py dataset.py models/ /workspace/

@ -24,31 +24,45 @@ Currently supported `--model` argument include:
* Run the following command to start a benchmark job locally:
```bash
python fluid_benchmark.py --model mnist --parallel 1 --device GPU --with_test
python fluid_benchmark.py --model mnist --device GPU
```
You can choose to use GPU/CPU training. With GPU training, you can specify
`--parallel 1` to run multi GPU training.
`--gpus <gpu_num>` to run multi GPU training.
* Run distributed training with parameter servers:
* start parameter servers:
```bash
PADDLE_TRAINING_ROLE=PSERVER PADDLE_PSERVER_PORT=7164 PADDLE_PSERVER_IPS=127.0.0.1 PADDLE_TRAINERS=1 PADDLE_CURRENT_IP=127.0.0.1 PADDLE_TRAINER_ID=0 python fluid_benchmark.py --model mnist --parallel 0 --device GPU --update_method pserver
PADDLE_TRAINING_ROLE=PSERVER PADDLE_PSERVER_PORT=7164 PADDLE_PSERVER_IPS=127.0.0.1 PADDLE_TRAINERS=1 PADDLE_CURRENT_IP=127.0.0.1 PADDLE_TRAINER_ID=0 python fluid_benchmark.py --model mnist --device GPU --update_method pserver
```
* start trainers:
```bash
PADDLE_TRAINING_ROLE=PSERVER PADDLE_PSERVER_PORT=7164 PADDLE_PSERVER_IPS=127.0.0.1 PADDLE_TRAINERS=1 PADDLE_CURRENT_IP=127.0.0.1 PADDLE_TRAINER_ID=0 python fluid_benchmark.py --model mnist --parallel 0 --device GPU --update_method pserver
PADDLE_TRAINING_ROLE=TRAINER PADDLE_PSERVER_PORT=7164 PADDLE_PSERVER_IPS=127.0.0.1 PADDLE_TRAINERS=1 PADDLE_CURRENT_IP=127.0.0.1 PADDLE_TRAINER_ID=0 python fluid_benchmark.py --model mnist --device GPU --update_method pserver
```
* Run distributed training using NCCL2
```bash
PADDLE_PSERVER_PORT=7164 PADDLE_TRAINER_IPS=192.168.0.2,192.168.0.3 PADDLE_CURRENT_IP=127.0.0.1 PADDLE_TRAINER_ID=0 python fluid_benchmark.py --model mnist --parallel 0 --device GPU --update_method nccl2
PADDLE_PSERVER_PORT=7164 PADDLE_TRAINER_IPS=192.168.0.2,192.168.0.3 PADDLE_CURRENT_IP=127.0.0.1 PADDLE_TRAINER_ID=0 python fluid_benchmark.py --model mnist --device GPU --update_method nccl2
```
## Run Distributed Benchmark on Kubernetes Cluster
You may need to build a Docker image before submitting a cluster job onto Kubernetes, or you will
have to start all those processes mannually on each node, which is not recommended.
To build the Docker image, you need to choose a paddle "whl" package to run with, you may either
download it from
http://www.paddlepaddle.org/docs/develop/documentation/zh/build_and_install/pip_install_en.html or
build it by your own. Once you've got the "whl" package, put it under the current directory and run:
```bash
docker build -t [your docker image name]:[your docker image tag] .
```
Then push the image to a Docker registry that your Kubernetes cluster can reach.
We provide a script `kube_gen_job.py` to generate Kubernetes yaml files to submit
distributed benchmark jobs to your cluster. To generate a job yaml, just run:
```bash
python kube_gen_job.py --jobname myjob --pscpu 4 --cpu 8 --gpu 8 --psmemory 20 --memory 40 --pservers 4 --trainers 4 --entry "python fluid_benchmark.py --model mnist --parallel 1 --device GPU --update_method pserver --with_test" --disttype pserver
python kube_gen_job.py --jobname myjob --pscpu 4 --cpu 8 --gpu 8 --psmemory 20 --memory 40 --pservers 4 --trainers 4 --entry "python fluid_benchmark.py --model mnist --gpus 8 --device GPU --update_method pserver " --disttype pserver
```
Then the yaml files are generated under directory `myjob`, you can run:
@ -58,3 +72,14 @@ kubectl create -f myjob/
```
The job shall start.
## Notes for Run Fluid Distributed with NCCL2 and RDMA
Before running NCCL2 distributed jobs, please check that whether your node has multiple network
interfaces, try to add the environment variable `export NCCL_SOCKET_IFNAME=eth0` to use your actual
network device.
To run high-performance distributed training, you must prepare your hardware environment to be
able to run RDMA enabled network communication, please check out [this](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/fluid/howto/cluster/nccl2_rdma_training.md)
note for details.

@ -94,6 +94,12 @@ def parse_args():
'--memory_optimize',
action='store_true',
help='If set, optimize runtime memory before start.')
parser.add_argument(
'--use_fake_data',
action='store_true',
help='If set ommit the actual read data operators.')
parser.add_argument(
'--profile', action='store_true', help='If set, profile a few steps.')
parser.add_argument(
'--update_method',
type=str,
@ -104,8 +110,8 @@ def parse_args():
return args
def append_nccl2_prepare():
if os.getenv("PADDLE_TRAINER_ID", None) != None:
def append_nccl2_prepare(trainer_id):
if trainer_id >= 0:
# append gen_nccl_id at the end of startup program
trainer_id = int(os.getenv("PADDLE_TRAINER_ID"))
port = os.getenv("PADDLE_PSERVER_PORT")
@ -132,12 +138,12 @@ def append_nccl2_prepare():
})
return nccl_id_var, num_trainers, trainer_id
else:
raise Exception(
"must set PADDLE_TRAINER_ID env variables for dist train.")
raise Exception("must set positive PADDLE_TRAINER_ID env variables for "
"nccl-based dist train.")
def dist_transpile():
if "PADDLE_TRAINING_ROLE" not in os.environ:
def dist_transpile(trainer_id):
if trainer_id < 0:
return None, None
# the port of all pservers, needed by both trainer and pserver
@ -154,9 +160,6 @@ def dist_transpile():
trainers = int(os.getenv("PADDLE_TRAINERS"))
# the IP of the local machine, needed by pserver only
current_endpoint = os.getenv("PADDLE_CURRENT_IP", "") + ":" + port
# the unique trainer id, starting from 0, needed by trainer
# only
trainer_id = int(os.getenv("PADDLE_TRAINER_ID", "0"))
# the role, should be either PSERVER or TRAINER
training_role = os.getenv("PADDLE_TRAINING_ROLE")
@ -198,6 +201,10 @@ def train(avg_loss, infer_prog, optimizer, train_reader, test_reader, batch_acc,
exe.run(train_prog)
return
if args.use_fake_data:
raise Exception(
"fake data is not supported in single GPU test for now.")
place = core.CPUPlace() if args.device == 'CPU' else core.CUDAPlace(0)
exe = fluid.Executor(place)
exe.run(startup_prog)
@ -244,7 +251,31 @@ def train(avg_loss, infer_prog, optimizer, train_reader, test_reader, batch_acc,
def train_parallel(avg_loss, infer_prog, optimizer, train_reader, test_reader,
batch_acc, args, train_prog, startup_prog, nccl_id_var,
num_trainers, trainer_id):
feed_var_list = [
var for var in train_prog.global_block().vars.itervalues()
if var.is_data
]
# generate fake:
if args.use_fake_data:
for var in feed_var_list:
v = startup_prog.global_block().clone_variable(var)
var.persistable = True
v.persistable = True
real_shape = list(var.shape)
real_shape[0] = args.batch_size / args.gpus
startup_prog.global_block().append_op(
outputs={"Out": v},
type="fill_constant",
attrs={"shape": real_shape,
"value": 1.0,
"dtype": var.dtype})
place = core.CPUPlace() if args.device == 'CPU' else core.CUDAPlace(0)
if nccl_id_var and trainer_id == 0:
#FIXME(wuyi): wait other trainer to start listening
time.sleep(30)
startup_exe = fluid.Executor(place)
startup_exe.run(startup_prog)
strategy = fluid.ExecutionStrategy()
@ -256,22 +287,27 @@ def train_parallel(avg_loss, infer_prog, optimizer, train_reader, test_reader,
exec_strategy=strategy,
num_trainers=num_trainers,
trainer_id=trainer_id)
feed_var_list = [
var for var in train_prog.global_block().vars.itervalues()
if var.is_data
]
feeder = fluid.DataFeeder(feed_var_list, place)
for pass_id in range(args.pass_num):
num_samples = 0
iters = 0
start_time = time.time()
for batch_id, data in enumerate(train_reader()):
if args.profile and pass_id == 0 and batch_id == 5:
profiler.start_profiler("All")
elif args.profile and pass_id == 0 and batch_id == 10:
profiler.stop_profiler("total", "/tmp/profile_%d" % trainer_id)
if iters == args.skip_batch_num:
start_time = time.time()
num_samples = 0
if iters == args.iterations:
break
loss, = exe.run([avg_loss.name], feed=feeder.feed(data))
if args.use_fake_data:
loss, = exe.run([avg_loss.name])
else:
loss, = exe.run([avg_loss.name], feed=feeder.feed(data))
if args.update_method == "pserver":
exe.bcast_params()
num_samples += len(data)
@ -302,7 +338,11 @@ def print_arguments(args):
def main():
args = parse_args()
print_arguments(args)
nccl_id_var, num_trainers, trainer_id = None, 1, 0
# the unique trainer id, starting from 0, needed by trainer
# only
nccl_id_var, num_trainers, trainer_id = (
None, 1, int(os.getenv("PADDLE_TRAINER_ID", "-1")))
if args.use_cprof:
pr = cProfile.Profile()
@ -316,7 +356,7 @@ def main():
fluid.memory_optimize(fluid.default_main_program())
if args.update_method == "pserver":
train_prog, startup_prog = dist_transpile()
train_prog, startup_prog = dist_transpile(trainer_id)
if not train_prog:
raise Exception(
"Must configure correct environments to run dist train.")
@ -332,7 +372,7 @@ def main():
train_args.append(fluid.default_startup_program())
if args.update_method == "nccl2":
nccl_id_var, num_trainers, trainer_id = append_nccl2_prepare()
nccl_id_var, num_trainers, trainer_id = append_nccl2_prepare(trainer_id)
if args.gpus == 1:
# NOTE: parallel executor use profiler interanlly
if args.use_nvprof and args.device == 'GPU':

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