Merge branch 'develop' of https://github.com/PaddlePaddle/Paddle into argmin_argmax

port
sneaxiy 7 years ago
commit 5c9dcc4d7d

@ -22,6 +22,7 @@
| jczaja | Jacek Czaja |
| JiayiFeng | Jia-Yi Feng |
| kbinias | Krzysztof Binias |
| kexinzhao | Ke-Xin Zhao |
| kuke | Yi-Bing Liu |
| lcy-seso | Ying Cao |
| lipeng-unisound | Peng Li |

@ -173,21 +173,6 @@ def seq_to_seq_net(embedding_dim, encoder_size, decoder_size, source_dict_dim,
return avg_cost, feeding_list
def to_lodtensor(data, place):
seq_lens = [len(seq) for seq in data]
cur_len = 0
lod = [cur_len]
for l in seq_lens:
cur_len += l
lod.append(cur_len)
flattened_data = np.concatenate(data, axis=0).astype("int64")
flattened_data = flattened_data.reshape([len(flattened_data), 1])
lod_t = core.LoDTensor()
lod_t.set(flattened_data, place)
lod_t.set_lod([lod])
return lod_t, lod[-1]
def lodtensor_to_ndarray(lod_tensor):
dims = lod_tensor.get_dims()
ndarray = np.zeros(shape=dims).astype('float32')

@ -125,18 +125,3 @@ def get_model(args):
batch_size=args.batch_size)
return loss, inference_program, adam, train_reader, test_reader, batch_acc
def to_lodtensor(data, place):
seq_lens = [len(seq) for seq in data]
cur_len = 0
lod = [cur_len]
for l in seq_lens:
cur_len += l
lod.append(cur_len)
flattened_data = numpy.concatenate(data, axis=0).astype("int64")
flattened_data = flattened_data.reshape([len(flattened_data), 1])
res = fluid.LoDTensor()
res.set(flattened_data, place)
res.set_lod([lod])
return res

@ -39,7 +39,7 @@ function(copy TARGET)
message(FATAL_ERROR "${TARGET} source numbers are not equal to destination numbers")
endif()
math(EXPR len "${copy_lib_SRCS_len} - 1")
add_custom_target(${TARGET} DEPENDS ${copy_lib_DEPS})
foreach(index RANGE ${len})
list(GET copy_lib_SRCS ${index} src)
@ -155,6 +155,15 @@ copy(inference_lib DEPS paddle_fluid_shared paddle_fluid
DSTS ${dst_dir}/${module} ${dst_dir}/${module}
)
if(WITH_CONTRIB)
set(contrib_dst_dir "${FLUID_INSTALL_DIR}/contrib/inference")
copy(contrib_inference_lib DEPS paddle_inference_api
SRCS ${PADDLE_SOURCE_DIR}/paddle/contrib/inference/paddle_inference_api.h
${PADDLE_BINARY_DIR}/paddle/contrib/inference/libpaddle_inference_api.*
DSTS ${contrib_dst_dir} ${contrib_dst_dir}
)
endif()
set(module "platform")
copy(platform_lib DEPS profiler_py_proto
SRCS ${src_dir}/${module}/*.h ${src_dir}/${module}/dynload/*.h ${src_dir}/${module}/details/*.h

@ -1,5 +1,5 @@
#!/bin/bash
python gen_doc.py layers --submodules control_flow device io nn ops tensor detection learning_rate_scheduler > layers.rst
python gen_doc.py layers --submodules control_flow device io nn ops tensor detection learning_rate_scheduler metric > layers.rst
for module in data_feeder clip metrics executor initializer io nets optimizer param_attr profiler regularizer
do

@ -33,6 +33,13 @@ Xavier
:members:
:noindex:
Bilinear
--------
.. autoclass:: paddle.fluid.initializer.Bilinear
:members:
:noindex:
force_init_on_cpu
-----------------
@ -73,3 +80,10 @@ XavierInitializer
:members:
:noindex:
BilinearInitializer
-------------------
.. autoclass:: paddle.fluid.initializer.BilinearInitializer
:members:
:noindex:

@ -59,3 +59,39 @@ get_inference_program
.. autofunction:: paddle.fluid.io.get_inference_program
:noindex:
save_checkpoint
---------------
.. autofunction:: paddle.fluid.io.save_checkpoint
:noindex:
load_checkpoint
---------------
.. autofunction:: paddle.fluid.io.load_checkpoint
:noindex:
clean_checkpoint
----------------
.. autofunction:: paddle.fluid.io.clean_checkpoint
:noindex:
load_persist_vars_without_grad
------------------------------
.. autofunction:: paddle.fluid.io.load_persist_vars_without_grad
:noindex:
save_persist_vars_without_grad
------------------------------
.. autofunction:: paddle.fluid.io.save_persist_vars_without_grad
:noindex:
get_latest_checkpoint_serial
----------------------------
.. autofunction:: paddle.fluid.io.get_latest_checkpoint_serial
:noindex:

File diff suppressed because it is too large Load Diff

@ -89,6 +89,13 @@ DecayedAdagradOptimizer
:members:
:noindex:
RMSPropOptimizer
----------------
.. autoclass:: paddle.fluid.optimizer.RMSPropOptimizer
:members:
:noindex:
Adadelta
--------

@ -23,3 +23,15 @@ profiler
.. autofunction:: paddle.fluid.profiler.profiler
:noindex:
start_profiler
--------------
.. autofunction:: paddle.fluid.profiler.start_profiler
:noindex:
stop_profiler
-------------
.. autofunction:: paddle.fluid.profiler.stop_profiler
:noindex:

@ -104,7 +104,7 @@ no changes added to commit (use "git add" and/or "git commit -a")
➜ docker run -it -v $(pwd):/paddle paddle:latest-dev bash -c "cd /paddle/build && ctest"
```
关于构建和测试的更多信息,请参见[这篇文档](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/getstarted/build_and_install/docker_install_cn.rst)。
关于构建和测试的更多信息,请参见[使用Docker安装运行](https://github.com/PaddlePaddle/Paddle/blob/develop/doc/v2/build_and_install/docker_install_cn.rst)。
## 提交commit

@ -14,4 +14,3 @@
#
add_subdirectory(inference)
add_subdirectory(tape)

@ -50,7 +50,7 @@ cc_test(test_paddle_inference_api
inference_api_test(test_paddle_inference_api_impl
ARGS test_word2vec test_image_classification)
if (WITH_ANAKIN)
if (WITH_ANAKIN AND WITH_TESTING) # only needed in CI
# Due to Anakin do not have official library releases and the versions of protobuf and cuda do not match Paddle's,
# so anakin library will not be merged to our official inference library. To use anakin prediction API, one need to
# compile the libinference_anakin_api.a and compile with anakin.so.

@ -1,25 +0,0 @@
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
if(APPLE)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wno-error=pessimizing-move")
endif(APPLE)
cc_library(tape_variable SRCS variable.cc DEPS ${FLUID_CORE_MODULES})
cc_library(tape SRCS tape.cc DEPS ${FLUID_CORE_MODULES} ${GLOB_OP_LIB} tape_variable)
cc_test(test_tape
SRCS test_tape.cc
DEPS tape tape_variable)

File diff suppressed because it is too large Load Diff

@ -1,131 +0,0 @@
// Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#pragma once
#include <string>
#include "paddle/contrib/tape/tape.h"
#include "paddle/contrib/tape/variable.h"
#include "paddle/fluid/framework/type_defs.h"
namespace paddle {
namespace tape {
class Function {};
class Fill {
public:
Fill(const std::string &initializer, const framework::AttributeMap &attrs)
: initializer_(initializer), attrs_(attrs) {}
void operator()(VariableHandle var) {
get_global_tape().AddOp(initializer_, {}, {{"Out", {var}}}, attrs_);
}
private:
const std::string initializer_;
const framework::AttributeMap attrs_;
};
class Mean {
public:
VariableHandle operator()(VariableHandle var) {
VariableHandle out(new Variable("mean"));
get_global_tape().AddOp("mean", {{"X", {var}}}, {{"Out", {out}}}, {});
return out;
}
};
class Linear {
public:
Linear(int in_dim, int out_dim, const std::string &act)
: w_(new Variable("LinearWeight")),
b_(new Variable("LinearBias")),
act_(act) {
Tape init_tape;
std::string initializer = "fill_constant";
framework::AttributeMap attrs;
attrs["dtype"] = paddle::framework::proto::VarType::Type::VarType_Type_FP32;
attrs["shape"] = std::vector<int>{in_dim, out_dim};
attrs["value"] = 1.0f;
init_tape.AddOp(initializer, {}, {{"Out", {w_}}}, attrs);
attrs["dtype"] = paddle::framework::proto::VarType::Type::VarType_Type_FP32;
attrs["shape"] = std::vector<int>{out_dim};
attrs["value"] = 1.0f;
init_tape.AddOp(initializer, {}, {{"Out", {b_}}}, attrs);
init_tape.Forward();
}
VariableHandle operator()(VariableHandle input) {
VariableHandle pre_bias(new Variable("linear"));
get_global_tape().AddOp("mul",
{{"X", {input}}, {"Y", {w_}}},
{{"Out", {pre_bias}}},
{{"x_num_col_dims", 1}, {"y_num_col_dims", 1}});
VariableHandle pre_act(new Variable("linear"));
get_global_tape().AddOp("elementwise_add",
{{"X", {pre_bias}}, {"Y", {b_}}},
{{"Out", {pre_act}}},
{{"axis", 1}});
VariableHandle post_act(new Variable("linear"));
get_global_tape().AddOp(
act_, {{"X", {pre_act}}}, {{"Out", {post_act}}}, {});
return post_act;
}
std::vector<VariableHandle> Params() { return {w_, b_}; }
private:
VariableHandle w_;
VariableHandle b_;
std::string act_;
};
class SGD {
public:
SGD(float learning_rate) : learning_rate_(new Variable("sgd")) {
Tape init_tape;
std::string initializer = "fill_constant";
framework::AttributeMap attrs;
attrs["dtype"] = paddle::framework::proto::VarType::Type::VarType_Type_FP32;
attrs["shape"] = std::vector<int>{1};
attrs["value"] = learning_rate;
init_tape.AddOp(initializer, {}, {{"Out", {learning_rate_}}}, attrs);
init_tape.Forward();
}
void operator()(VariableHandle input) {
PADDLE_ENFORCE(get_global_tape().HasBeenBackwarded(),
"optimization must happen after the backward");
Tape temp_tape;
temp_tape.AddOp("sgd",
{{"Param", {input}},
{"LearningRate", {learning_rate_}},
{"Grad", {input->Grad()}}},
{{"ParamOut", {input}}},
{});
temp_tape.Forward();
}
private:
VariableHandle learning_rate_;
};
}
}

File diff suppressed because it is too large Load Diff

@ -1,64 +0,0 @@
// Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#pragma once
#include <map>
#include <memory>
#include <string>
#include <vector>
#include "paddle/contrib/tape/variable.h"
namespace paddle {
namespace tape {
using VariableHandleMap = std::map<std::string, std::vector<VariableHandle>>;
struct OpHandle {
OpHandle(const std::string &type,
const VariableHandleMap &in_vars,
const VariableHandleMap &out_vars,
const framework::AttributeMap &attrs)
: type_(type), inputs_(in_vars), outputs_(out_vars), attrs_(attrs) {}
std::string type_;
VariableHandleMap inputs_;
VariableHandleMap outputs_;
framework::AttributeMap attrs_;
};
class Tape {
public:
void AddOp(const std::string &type,
const VariableHandleMap &in_vars,
VariableHandleMap out_vars,
const framework::AttributeMap &attrs);
void Forward();
void Backward(VariableHandle target);
bool HasBeenBackwarded() { return has_been_backwarded_; }
private:
bool has_been_backwarded_ = false;
size_t current_position_ = 0;
std::vector<OpHandle> tape_;
std::shared_ptr<Tape> backward_tape_;
};
Tape &get_global_tape();
void reset_global_tape();
}
}

@ -1,61 +0,0 @@
// Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#include "gtest/gtest.h"
#include "paddle/contrib/tape/function.h"
using namespace paddle::tape;
TEST(Tape, TestMLP) {
LOG(INFO) << "TestMLP";
Linear linear1(3, 3, "relu");
Linear linear2(3, 3, "relu");
Mean mean;
SGD sgd(0.001);
std::string initializer = "fill_constant";
paddle::framework::AttributeMap attrs;
attrs["dtype"] = paddle::framework::proto::VarType::Type::VarType_Type_FP32;
attrs["shape"] = std::vector<int>{3, 3};
attrs["value"] = 1.0f;
Fill filler(initializer, attrs);
for (int i = 0; i < 2; ++i) {
reset_global_tape();
VariableHandle input(new Variable("input"));
filler(input);
auto loss = mean(linear2(linear1(input)));
get_global_tape().Backward(loss);
for (auto w : linear1.Params()) {
sgd(w);
}
for (auto w : linear2.Params()) {
sgd(w);
}
}
}
int main(int argc, char** argv) {
std::vector<paddle::platform::Place> places;
places.emplace_back(paddle::platform::CPUPlace());
paddle::platform::DeviceContextPool::Init(places);
testing::InitGoogleTest(&argc, argv);
return RUN_ALL_TESTS();
}

@ -1,85 +0,0 @@
// Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
#pragma once
#include <memory>
#include "paddle/fluid/framework/operator.h" // framework::kGradVarSuffix
#include "paddle/fluid/framework/program_desc.h"
#include "paddle/fluid/framework/variable.h"
namespace paddle {
namespace tape {
class Variable;
using VariableHandle = std::shared_ptr<Variable>;
/*
* Combination of
* framework::VarDesc desc_;
* framework::Variable var_;
*/
class Variable {
public:
Variable(const std::string pre_fix)
: desc_(pre_fix + std::to_string(count())) {}
Variable(const std::string pre_fix, bool is_grad)
: desc_(pre_fix + (is_grad ? framework::kGradVarSuffix
: std::to_string(count()))) {}
~Variable() { LOG(INFO) << "Deleting " << Name(); }
// Instantiate LoDTensor/SelectedRow
void InitializeVariable();
VariableHandle Grad() {
if (grad_.expired()) {
VariableHandle new_grad(new Variable(desc_.Name(), true));
grad_ = new_grad;
return new_grad;
} else {
return VariableHandle(grad_);
}
}
// Stochastic Gradient Descent with Momentum
// VariableHandle Momentum ();
// void init(const std::string& initializer,
// const framework::AttributeMap& attrs);
// void value() {};
const framework::VarDesc& Desc() const { return desc_; }
framework::VarDesc* MutableDesc() { return &desc_; }
// TODO(tonyyang-svail): No need to expose name
std::string Name() const { return desc_.Name(); }
framework::Variable* Var() { return &var_; }
private:
int count() {
static int counter = 0;
return counter++;
}
framework::VarDesc desc_;
framework::Variable var_;
std::weak_ptr<Variable> grad_;
};
}
}

@ -295,13 +295,14 @@ void Executor::Run(const ProgramDesc& program, Scope* scope,
std::unique_ptr<ExecutorPrepareContext> Executor::Prepare(
const ProgramDesc& program, int block_id) {
auto* ctx = new ExecutorPrepareContext(program, block_id);
std::unique_ptr<ExecutorPrepareContext> ctx(
new ExecutorPrepareContext(program, block_id));
PADDLE_ENFORCE_LT(static_cast<size_t>(block_id), program.Size());
auto& block = program.Block(block_id);
for (auto& op_desc : block.AllOps()) {
ctx->ops_.push_back(OpRegistry::CreateOp(*op_desc));
}
return std::unique_ptr<ExecutorPrepareContext>(ctx);
return ctx;
}
std::vector<std::shared_ptr<ExecutorPrepareContext>> Executor::Prepare(
@ -406,6 +407,9 @@ void Executor::EnableMKLDNN(const ProgramDesc& program) {
}
}
}
#else
LOG(WARNING)
<< "'MKLDNN' is not supported, Please re-compile with WITH_MKLDNN option";
#endif
}

@ -18,6 +18,7 @@ limitations under the License. */
#include "paddle/fluid/framework/init.h"
#include "paddle/fluid/framework/operator.h"
#include "paddle/fluid/operators/math/blas.h"
#include "paddle/fluid/platform/device_context.h"
#include "paddle/fluid/platform/place.h"
#include "paddle/fluid/string/piece.h"
@ -113,6 +114,9 @@ void InitDevices(bool init_p2p, const std::vector<int> devices) {
}
places.emplace_back(platform::CPUPlace());
platform::DeviceContextPool::Init(places);
#ifndef PADDLE_WITH_MKLDNN
operators::math::SetNumThreads(1);
#endif
}
void InitGLOG(const std::string &prog_name) {

@ -410,5 +410,38 @@ void LoDTensor::MergeLoDTensor(
}
}
LoD ConvertToLengthBasedLoD(const LoD &offset_lod) {
LoD length_lod;
length_lod.reserve(offset_lod.size());
for (size_t lvl = 0; lvl < offset_lod.size(); ++lvl) {
std::vector<size_t> level;
if (offset_lod[lvl].size() > 0) {
level.reserve(offset_lod[lvl].size() - 1);
}
for (size_t idx = 0; idx < offset_lod[lvl].size() - 1; ++idx) {
level.push_back(offset_lod[lvl][idx + 1] - offset_lod[lvl][idx]);
}
length_lod.push_back(level);
}
return length_lod;
}
LoD ConvertToOffsetBasedLoD(const LoD &length_lod) {
LoD offset_lod;
offset_lod.reserve(length_lod.size());
for (size_t lvl = 0; lvl < length_lod.size(); ++lvl) {
std::vector<size_t> level;
level.reserve(length_lod[lvl].size() + 1);
size_t tmp = 0;
level.push_back(tmp);
for (size_t idx = 0; idx < length_lod[lvl].size(); ++idx) {
tmp += length_lod[lvl][idx];
level.push_back(tmp);
}
offset_lod.push_back(level);
}
return offset_lod;
}
} // namespace framework
} // namespace paddle

@ -226,5 +226,19 @@ extern void WriteToRecordIO(recordio::Writer* writer,
extern std::vector<LoDTensor> ReadFromRecordIO(
recordio::Scanner* scanner, const platform::DeviceContext& dev_ctx);
/*
* Convert between length-based LoD and offset-based LoD.
* The implementation of LoDTensor class use offset-based LoD.
* However, we want to expose the more user-friendly length-based
* LoD to the Python side instead.
*
* Example:
* If offset_lod = [[0, 2, 3],[0, 3, 5, 9]]
* then length_lod = [[2, 1], [3, 2, 4]]
*/
LoD ConvertToLengthBasedLoD(const LoD& offset_lod);
LoD ConvertToOffsetBasedLoD(const LoD& length_lod);
} // namespace framework
} // namespace paddle

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