Merge branch 'develop' of https://github.com/PaddlePaddle/paddle into add-ROIPooling

mobile_baidu
guosheng 8 years ago
commit c07cbf7daf

3
.gitignore vendored

@ -24,4 +24,5 @@ cmake-build-*
python/paddle/v2/framework/core.so
CMakeFiles
cmake_install.cmake
paddle/.timestamp
python/paddlepaddle.egg-info/

@ -17,14 +17,20 @@
- id: detect-private-key
files: (?!.*third_party)^.*$ | (?!.*book)^.*$
- id: end-of-file-fixer
- repo: https://github.com/PaddlePaddle/clang-format-pre-commit-hook.git
sha: 28c0ea8a67a3e2dbbf4822ef44e85b63a0080a29
- repo: local
hooks:
- id: clang-formater
- id: clang-format
name: clang-format
description: Format files with ClangFormat.
entry: clang-format -i
language: system
files: \.(c|cc|cxx|cpp|cu|h|hpp|hxx|proto)$
- repo: https://github.com/PaddlePaddle/pre-commit-golang
sha: 16398aeccf263adaf53b2495eed0406347d76281
sha: 8337620115c25ff8333f1b1a493bd031049bd7c0
hooks:
- id: go-fmt
types: [go]
- id: gometalinter
types: [go]
- id: go-fmt
types:
- go
- id: gometalinter
types:
- go

@ -37,8 +37,8 @@ before_install:
- if [[ "$JOB" == "check_style" ]]; then sudo ln -s /usr/bin/clang-format-3.8 /usr/bin/clang-format; fi
# Paddle is using protobuf 3.1 currently. Protobuf 3.2 breaks the compatibility. So we specify the python
# protobuf version.
- pip install numpy wheel 'protobuf==3.1' sphinx==1.5.6 recommonmark sphinx-rtd-theme==0.1.9 virtualenv pre-commit requests==2.9.2 LinkChecker
- pip install rarfile
- pip install -r $TRAVIS_BUILD_DIR/python/requirements.txt
- pip install wheel sphinx==1.5.6 recommonmark sphinx-rtd-theme==0.1.9 virtualenv pre-commit LinkChecker
- curl https://glide.sh/get | bash
- eval "$(GIMME_GO_VERSION=1.8.3 gimme)"
- go get -u github.com/alecthomas/gometalinter

@ -14,8 +14,8 @@
cmake_minimum_required(VERSION 3.0)
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
set(PROJ_ROOT ${CMAKE_CURRENT_SOURCE_DIR})
set(PROJ_BINARY_ROOT ${CMAKE_CURRENT_BINARY_DIR})
set(PADDLE_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR})
set(PADDLE_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR})
include(system)
@ -36,6 +36,8 @@ include(simd)
################################ Configurations #######################################
option(WITH_GPU "Compile PaddlePaddle with NVIDIA GPU" ${CUDA_FOUND})
option(WITH_AVX "Compile PaddlePaddle with AVX intrinsics" ${AVX_FOUND})
option(WITH_MKLDNN "Compile PaddlePaddle with mkl-dnn support." ${AVX_FOUND})
option(WITH_MKLML "Compile PaddlePaddle with mklml package." ${AVX_FOUND})
option(WITH_DSO "Compile PaddlePaddle with dynamic linked CUDA" ON)
option(WITH_TESTING "Compile PaddlePaddle with unit testing" ON)
option(WITH_SWIG_PY "Compile PaddlePaddle with inference api" ON)
@ -74,6 +76,10 @@ if(ANDROID)
"Disable PYTHON when cross-compiling for Android" FORCE)
set(WITH_RDMA OFF CACHE STRING
"Disable RDMA when cross-compiling for Android" FORCE)
set(WITH_MKLDNN OFF CACHE STRING
"Disable MKLDNN when cross-compiling for Android" FORCE)
set(WITH_MKLML OFF CACHE STRING
"Disable MKLML package when cross-compiling for Android" FORCE)
endif(ANDROID)
set(THIRD_PARTY_PATH "${CMAKE_BINARY_DIR}/third_party" CACHE STRING
@ -87,6 +93,7 @@ endif()
########################################################################################
include(external/mklml) # download mklml package
include(external/zlib) # download, build, install zlib
include(external/gflags) # download, build, install gflags
include(external/glog) # download, build, install glog
@ -94,6 +101,7 @@ include(external/gtest) # download, build, install gtest
include(external/protobuf) # download, build, install protobuf
include(external/python) # download, build, install python
include(external/openblas) # download, build, install openblas
include(external/mkldnn) # download, build, install mkldnn
include(external/swig) # download, build, install swig
include(external/warpctc) # download, build, install warpctc
include(external/any) # download libn::any
@ -113,8 +121,8 @@ include(version) # set PADDLE_VERSION
include(coveralls) # set code coverage
include_directories("${PROJ_ROOT}")
include_directories("${PROJ_ROOT}/paddle/cuda/include")
include_directories("${PADDLE_SOURCE_DIR}")
include_directories("${PADDLE_SOURCE_DIR}/paddle/cuda/include")
include_directories("${CMAKE_CURRENT_BINARY_DIR}/proto")
include_directories("${CMAKE_CURRENT_BINARY_DIR}/go/pserver/client/c")
include_directories(${Boost_INCLUDE_DIRS})
@ -135,6 +143,10 @@ if(WITH_GPU)
endif(NOT WITH_DSO)
endif(WITH_GPU)
if(WITH_MKLDNN)
list(APPEND EXTERNAL_LIBS ${MKLDNN_LIB} ${MKLDNN_IOMP_LIB})
endif()
if(USE_NNPACK)
include(external/nnpack)
list(APPEND EXTERNAL_LIBS ${NNPACK_LIBS})
@ -152,10 +164,12 @@ if(WITH_GOLANG)
add_subdirectory(go)
endif(WITH_GOLANG)
set(PADDLE_PYTHON_BUILD_DIR "${CMAKE_CURRENT_BINARY_DIR}/python/build")
add_subdirectory(paddle)
if(WITH_PYTHON)
add_subdirectory(python)
endif()
if(WITH_DOC)
add_subdirectory(doc)
endif()

@ -27,25 +27,24 @@ RUN apt-get update && \
git python-pip python-dev openssh-server bison \
wget unzip unrar tar xz-utils bzip2 gzip coreutils ntp \
curl sed grep graphviz libjpeg-dev zlib1g-dev \
python-numpy python-matplotlib gcc g++ \
automake locales clang-format-3.8 swig doxygen cmake \
python-matplotlib gcc-4.8 g++-4.8 \
automake locales clang-format swig doxygen cmake \
liblapack-dev liblapacke-dev libboost-dev \
clang-3.8 llvm-3.8 libclang-3.8-dev \
net-tools && \
apt-get clean -y
# Install Go and glide
RUN wget -O go.tgz https://storage.googleapis.com/golang/go1.8.1.linux-amd64.tar.gz && \
tar -C /usr/local -xzf go.tgz && \
RUN wget -qO- https://storage.googleapis.com/golang/go1.8.1.linux-amd64.tar.gz | \
tar -xz -C /usr/local && \
mkdir /root/gopath && \
mkdir /root/gopath/bin && \
mkdir /root/gopath/src && \
rm go.tgz
mkdir /root/gopath/src
ENV GOROOT=/usr/local/go GOPATH=/root/gopath
# should not be in the same line with GOROOT definition, otherwise docker build could not find GOROOT.
ENV PATH=${PATH}:${GOROOT}/bin:${GOPATH}/bin
# install glide
RUN curl -q https://glide.sh/get | sh
RUN curl -s -q https://glide.sh/get | sh
# git credential to skip password typing
RUN git config --global credential.helper store
@ -56,19 +55,37 @@ RUN localedef -i en_US -f UTF-8 en_US.UTF-8
# FIXME: due to temporary ipykernel dependency issue, specify ipykernel jupyter
# version util jupyter fixes this issue.
RUN pip install --upgrade pip && \
pip install -U 'protobuf==3.1.0' && \
pip install -U wheel pillow BeautifulSoup && \
pip install -U wheel && \
pip install -U docopt PyYAML sphinx && \
pip install -U sphinx-rtd-theme==0.1.9 recommonmark && \
pip install pre-commit 'requests==2.9.2' 'ipython==5.3.0' && \
pip install -U sphinx-rtd-theme==0.1.9 recommonmark
RUN pip install pre-commit 'ipython==5.3.0' && \
pip install 'ipykernel==4.6.0' 'jupyter==1.0.0' && \
pip install rarfile
pip install opencv-python
COPY ./python/requirements.txt /root/
RUN pip install -r /root/requirements.txt
# To fix https://github.com/PaddlePaddle/Paddle/issues/1954, we use
# the solution in https://urllib3.readthedocs.io/en/latest/user-guide.html#ssl-py2
RUN apt-get install -y libssl-dev libffi-dev
RUN pip install certifi urllib3[secure]
# TODO(qijun) The template library Eigen doesn't work well with GCC 5
# coming with the default Docker image, so we switch to use GCC 4.8
# by default. And I will check Eigen library later.
RUN ln -sf gcc-4.8 /usr/bin/gcc && \
ln -sf gcc-ar-4.8 /usr/bin/gcc-ar && \
ln -sf gcc-nm-4.8 /usr/bin/gcc-nm && \
ln -sf gcc-ranlib-4.8 /usr/bin/gcc-ranlib && \
ln -sf gcc-4.8 /usr/bin/x86_64-linux-gnu-gcc && \
ln -sf gcc-ar-4.8 /usr/bin/x86_64-linux-gnu-gcc-ar && \
ln -sf gcc-nm-4.8 /usr/bin/x86_64-linux-gnu-gcc-nm && \
ln -sf gcc-ranlib-4.8 /usr/bin/x86_64-linux-gnu-gcc-ranlib && \
ln -sf g++-4.8 /usr/bin/g++ && \
ln -sf g++-4.8 /usr/bin/x86_64-linux-gnu-g++
# Install woboq_codebrowser to /woboq
RUN git clone https://github.com/woboq/woboq_codebrowser /woboq && \
(cd /woboq \

@ -72,7 +72,7 @@ We provide [English](http://doc.paddlepaddle.org/develop/doc/) and
- [Deep Learning 101](http://book.paddlepaddle.org/index.html)
You might want to start from the this online interactive book that can run in Jupyter Notebook.
You might want to start from this online interactive book that can run in Jupyter Notebook.
- [Distributed Training](http://doc.paddlepaddle.org/develop/doc/howto/usage/cluster/cluster_train_en.html)

@ -15,23 +15,44 @@
set(CBLAS_FOUND OFF)
## Find MKL First.
set(INTEL_ROOT "/opt/intel" CACHE PATH "Folder contains intel libs")
set(MKL_ROOT ${INTEL_ROOT}/mkl CACHE PATH "Folder contains MKL")
## Find MKLML First.
if(WITH_MKLML AND MKLML_INC_DIR AND MKLML_LIB)
set(CBLAS_FOUND ON)
set(CBLAS_PROVIDER MKLML)
set(CBLAS_INC_DIR ${MKLML_INC_DIR})
set(CBLAS_LIBRARIES ${MKLML_LIB})
add_definitions(-DPADDLE_USE_MKLML)
add_definitions(-DLAPACK_FOUND)
message(STATUS "Found cblas and lapack in MKLML "
"(include: ${CBLAS_INC_DIR}, library: ${CBLAS_LIBRARIES})")
return()
endif()
## Then find MKL.
set(INTEL_MKL_ROOT "/opt/intel/mkl" CACHE PATH "Folder contains intel mkl libs")
set(MKL_ROOT $ENV{MKL_ROOT} CACHE PATH "Folder contains env MKL")
set(MKL_INCLUDE_SEARCH_PATHS
${MKL_ROOT}/include
${INTEL_MKL_ROOT}/include)
set(MKL_LIB_SEARCH_PATHS
${MKL_ROOT}/lib
${MKL_ROOT}/lib/intel64
${INTEL_MKL_ROOT}/lib
${INTEL_MKL_ROOT}/lib/intel64)
find_path(MKL_INC_DIR mkl.h PATHS
${MKL_ROOT}/include)
${MKL_INCLUDE_SEARCH_PATHS})
find_path(MKL_LAPACK_INC_DIR mkl_lapacke.h PATHS
${MKL_ROOT}/include)
${MKL_INCLUDE_SEARCH_PATHS})
find_library(MKL_CORE_LIB NAMES mkl_core PATHS
${MKL_ROOT}/lib
${MKL_ROOT}/lib/intel64)
${MKL_LIB_SEARCH_PATHS})
find_library(MKL_SEQUENTIAL_LIB NAMES mkl_sequential PATHS
${MKL_ROOT}/lib
${MKL_ROOT}/lib/intel64)
${MKL_LIB_SEARCH_PATHS})
find_library(MKL_INTEL_LP64 NAMES mkl_intel_lp64 PATHS
${MKL_ROOT}/lib
${MKL_ROOT}/lib/intel64)
${MKL_LIB_SEARCH_PATHS})
if(MKL_LAPACK_INC_DIR AND MKL_INC_DIR AND MKL_CORE_LIB AND MKL_SEQUENTIAL_LIB AND MKL_INTEL_LP64)
set(CBLAS_FOUND ON)

@ -67,6 +67,28 @@ else()
include_directories(${CUDA_TOOLKIT_INCLUDE})
endif(NOT WITH_GPU)
if(WITH_MKLDNN)
add_definitions(-DPADDLE_USE_MKLDNN)
if (WITH_MKLML AND MKLDNN_IOMP_DIR)
message(STATUS "Enable Intel OpenMP at ${MKLDNN_IOMP_DIR}")
set(OPENMP_FLAGS "-fopenmp")
set(CMAKE_C_CREATE_SHARED_LIBRARY_FORBIDDEN_FLAGS ${OPENMP_FLAGS})
set(CMAKE_CXX_CREATE_SHARED_LIBRARY_FORBIDDEN_FLAGS ${OPENMP_FLAGS})
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OPENMP_FLAGS}")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OPENMP_FLAGS}")
else()
find_package(OpenMP)
if(OPENMP_FOUND)
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
else()
message(WARNING "Can not find OpenMP."
"Some performance features in MKLDNN may not be available")
endif()
endif()
endif(WITH_MKLDNN)
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${SIMD_FLAG}")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${SIMD_FLAG}")
@ -107,7 +129,7 @@ if(WITH_GOLANG)
add_custom_command(OUTPUT ${CMAKE_BINARY_DIR}/glide
COMMAND env GOPATH=${GOPATH} ${GLIDE} install
COMMAND touch ${CMAKE_BINARY_DIR}/glide
DEPENDS ${PROJ_ROOT}/go/glide.lock
DEPENDS ${PADDLE_SOURCE_DIR}/go/glide.lock
WORKING_DIRECTORY "${PADDLE_IN_GOPATH}/go"
)

@ -42,26 +42,21 @@ macro(add_style_check_target TARGET_NAME)
if(WITH_STYLE_CHECK)
set(SOURCES_LIST ${ARGN})
list(REMOVE_DUPLICATES SOURCES_LIST)
list(SORT SOURCES_LIST)
foreach(filename ${SOURCES_LIST})
set(LINT ON)
foreach(pattern ${IGNORE_PATTERN})
if(filename MATCHES ${pattern})
message(STATUS "DROP LINT ${filename}")
set(LINT OFF)
list(REMOVE_ITEM SOURCES_LIST ${filename})
endif()
endforeach()
if(LINT MATCHES ON)
# cpplint code style
get_filename_component(base_filename ${filename} NAME)
set(CUR_GEN ${CMAKE_CURRENT_BINARY_DIR}/${base_filename}.cpplint)
add_custom_command(TARGET ${TARGET_NAME} PRE_BUILD
COMMAND "${PYTHON_EXECUTABLE}" "${PROJ_ROOT}/paddle/scripts/cpplint.py"
"--filter=${STYLE_FILTER}"
"--write-success=${CUR_GEN}" ${filename}
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
endif()
endforeach()
if(SOURCES_LIST)
add_custom_command(TARGET ${TARGET_NAME} POST_BUILD
COMMAND "${PYTHON_EXECUTABLE}" "${PADDLE_SOURCE_DIR}/paddle/scripts/cpplint.py"
"--filter=${STYLE_FILTER}"
${SOURCES_LIST}
COMMENT "cpplint: Checking source code style"
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
endif()
endif()
endmacro()

@ -7,8 +7,8 @@ INCLUDE_DIRECTORIES(${ANY_SOURCE_DIR}/src/extern_lib_any)
ExternalProject_Add(
extern_lib_any
${EXTERNAL_PROJECT_LOG_ARGS}
GIT_REPOSITORY "https://github.com/thelink2012/any.git"
GIT_TAG "8fef1e93710a0edf8d7658999e284a1142c4c020"
GIT_REPOSITORY "https://github.com/PaddlePaddle/any.git"
GIT_TAG "15595d8324be9e8a9a80d9ae442fdd12bd66df5d"
PREFIX ${ANY_SOURCE_DIR}
UPDATE_COMMAND ""
CONFIGURE_COMMAND ""

@ -7,17 +7,8 @@ INCLUDE_DIRECTORIES(${EIGEN_SOURCE_DIR}/src/extern_eigen3)
ExternalProject_Add(
extern_eigen3
${EXTERNAL_PROJECT_LOG_ARGS}
# for latest version, please get from official website
# URL "https://bitbucket.org/eigen/eigen/get/3.3.4.tar.gz"
# URL_MD5 "1a47e78efe365a97de0c022d127607c3"
# for no-ssl http support, please get from bazel's mirror
# URL "http://mirror.bazel.build/bitbucket.org/eigen/eigen/get/f3a22f35b044.tar.gz"
# URL_MD5 "4645c66075982da6fa0bcf6b20f3e8f7"
# get from github mirror
GIT_REPOSITORY "https://github.com/RLovelett/eigen.git"
GIT_TAG "a46d2e7337c4656f00abe54a8115f6d76153a048"
GIT_TAG "master"
PREFIX ${EIGEN_SOURCE_DIR}
UPDATE_COMMAND ""
CONFIGURE_COMMAND ""

@ -28,7 +28,14 @@ INCLUDE_DIRECTORIES(${GFLAGS_INCLUDE_DIR})
ExternalProject_Add(
extern_gflags
${EXTERNAL_PROJECT_LOG_ARGS}
GIT_REPOSITORY "https://github.com/gflags/gflags.git"
# TODO(yiwang): The annoying warnings mentioned in
# https://github.com/PaddlePaddle/Paddle/issues/3277 are caused by
# gflags. I fired a PR https://github.com/gflags/gflags/pull/230
# to fix it. Before it gets accepted by the gflags team, we use
# my personal fork, which contains above fix, temporarily. Let's
# change this back to the official Github repo once my PR is
# merged.
GIT_REPOSITORY "https://github.com/wangkuiyi/gflags.git"
PREFIX ${GFLAGS_SOURCES_DIR}
UPDATE_COMMAND ""
CMAKE_ARGS -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}

@ -34,9 +34,15 @@ IF(WITH_TESTING)
"${GTEST_INSTALL_DIR}/lib/libgtest_main.a" CACHE FILEPATH "gtest main libraries." FORCE)
ENDIF(WIN32)
IF(WITH_MKLML)
# wait for mklml downloading completed
SET(GTEST_DEPENDS ${MKLML_PROJECT})
ENDIF()
ExternalProject_Add(
extern_gtest
${EXTERNAL_PROJECT_LOG_ARGS}
DEPENDS ${GTEST_DEPENDS}
GIT_REPOSITORY "https://github.com/google/googletest.git"
GIT_TAG "release-1.8.0"
PREFIX ${GTEST_SOURCES_DIR}

@ -0,0 +1,67 @@
# Copyright (c) 2017 PaddlePaddle Authors. All Rights Reserve.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
IF(NOT ${WITH_MKLDNN})
return()
ENDIF(NOT ${WITH_MKLDNN})
INCLUDE(ExternalProject)
SET(MKLDNN_PROJECT "extern_mkldnn")
SET(MKLDNN_SOURCES_DIR ${THIRD_PARTY_PATH}/mkldnn)
SET(MKLDNN_INSTALL_DIR ${THIRD_PARTY_PATH}/install/mkldnn)
SET(MKLDNN_INC_DIR "${MKLDNN_INSTALL_DIR}/include" CACHE PATH "mkldnn include directory." FORCE)
IF(WIN32 OR APPLE)
MESSAGE(WARNING
"Windows or Mac is not supported with MKLDNN in Paddle yet."
"Force WITH_MKLDNN=OFF")
SET(WITH_MKLDNN OFF CACHE STRING "Disable MKLDNN in Windows and MacOS" FORCE)
return()
ENDIF()
SET(MKLDNN_LIB "${MKLDNN_INSTALL_DIR}/lib/libmkldnn.so" CACHE FILEPATH "mkldnn library." FORCE)
MESSAGE(STATUS "Set ${MKLDNN_INSTALL_DIR}/lib to runtime path")
SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
SET(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_RPATH}" "${MKLDNN_INSTALL_DIR}/lib")
INCLUDE_DIRECTORIES(${MKLDNN_INC_DIR})
IF(${CBLAS_PROVIDER} STREQUAL "MKLML")
SET(MKLDNN_DEPENDS ${MKLML_PROJECT})
SET(MKLDNN_MKLROOT ${MKLML_ROOT})
SET(MKLDNN_IOMP_LIB ${MKLML_IOMP_LIB})
SET(MKLDNN_IOMP_DIR ${MKLML_LIB_DIR})
MESSAGE(STATUS "Build MKLDNN with ${MKLDNN_MKLROOT}")
ENDIF()
ExternalProject_Add(
${MKLDNN_PROJECT}
${EXTERNAL_PROJECT_LOG_ARGS}
DEPENDS ${MKLDNN_DEPENDS}
GIT_REPOSITORY "https://github.com/01org/mkl-dnn.git"
GIT_TAG "v0.9"
PREFIX ${MKLDNN_SOURCES_DIR}
UPDATE_COMMAND ""
CMAKE_ARGS -DCMAKE_INSTALL_PREFIX=${MKLDNN_INSTALL_DIR}
CMAKE_ARGS -DMKLROOT=${MKLDNN_MKLROOT}
CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${MKLDNN_INSTALL_DIR}
-DMKLROOT:PATH=${MKLDNN_MKLROOT}
)
ADD_LIBRARY(mkldnn SHARED IMPORTED GLOBAL)
SET_PROPERTY(TARGET mkldnn PROPERTY IMPORTED_LOCATION ${MKLDNN_LIB})
ADD_DEPENDENCIES(mkldnn ${MKLDNN_PROJECT})
MESSAGE(STATUS "Mkldnn library: ${MKLDNN_LIB}")
LIST(APPEND external_project_dependencies mkldnn)

@ -0,0 +1,67 @@
# Copyright (c) 2017 PaddlePaddle Authors. All Rights Reserve.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
IF(NOT ${WITH_MKLML})
return()
ENDIF(NOT ${WITH_MKLML})
IF(WIN32 OR APPLE)
MESSAGE(WARNING
"Windows or Mac is not supported with MKLML in Paddle yet."
"Force WITH_MKLML=OFF")
SET(WITH_MKLML OFF CACHE STRING "Disable MKLML package in Windows and MacOS" FORCE)
return()
ENDIF()
INCLUDE(ExternalProject)
SET(MKLML_PROJECT "extern_mklml")
SET(MKLML_VER "mklml_lnx_2018.0.20170720")
SET(MKLML_URL "https://github.com/01org/mkl-dnn/releases/download/v0.9/${MKLML_VER}.tgz")
SET(MKLML_SOURCE_DIR "${THIRD_PARTY_PATH}/mklml")
SET(MKLML_DOWNLOAD_DIR "${MKLML_SOURCE_DIR}/src/${MKLML_PROJECT}")
SET(MKLML_DST_DIR "mklml")
SET(MKLML_INSTALL_ROOT "${THIRD_PARTY_PATH}/install")
SET(MKLML_INSTALL_DIR ${MKLML_INSTALL_ROOT}/${MKLML_DST_DIR})
SET(MKLML_ROOT ${MKLML_INSTALL_DIR}/${MKLML_VER})
SET(MKLML_INC_DIR ${MKLML_ROOT}/include)
SET(MKLML_LIB_DIR ${MKLML_ROOT}/lib)
SET(MKLML_LIB ${MKLML_LIB_DIR}/libmklml_intel.so)
SET(MKLML_IOMP_LIB ${MKLML_LIB_DIR}/libiomp5.so)
SET(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_RPATH}" "${MKLML_ROOT}/lib")
INCLUDE_DIRECTORIES(${MKLML_INC_DIR})
FILE(WRITE ${MKLML_DOWNLOAD_DIR}/CMakeLists.txt
"PROJECT(MKLML)\n"
"cmake_minimum_required(VERSION 3.0)\n"
"install(DIRECTORY ${MKLML_VER}\n"
" DESTINATION ${MKLML_DST_DIR})\n")
ExternalProject_Add(
${MKLML_PROJECT}
${EXTERNAL_PROJECT_LOG_ARGS}
PREFIX ${MKLML_SOURCE_DIR}
DOWNLOAD_DIR ${MKLML_DOWNLOAD_DIR}
DOWNLOAD_COMMAND wget --no-check-certificate -qO- ${MKLML_URL} | tar xz -C ${MKLML_DOWNLOAD_DIR}
DOWNLOAD_NO_PROGRESS 1
UPDATE_COMMAND ""
CMAKE_ARGS -DCMAKE_INSTALL_PREFIX=${MKLML_INSTALL_ROOT}
CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${MKLML_INSTALL_ROOT}
)
ADD_LIBRARY(mklml SHARED IMPORTED GLOBAL)
SET_PROPERTY(TARGET mklml PROPERTY IMPORTED_LOCATION ${MKLML_LIB})
ADD_DEPENDENCIES(mklml ${MKLML_PROJECT})
LIST(APPEND external_project_dependencies mklml)

@ -69,9 +69,22 @@ ENDIF(NOT ${CBLAS_FOUND})
MESSAGE(STATUS "BLAS library: ${CBLAS_LIBRARIES}")
INCLUDE_DIRECTORIES(${CBLAS_INC_DIR})
ADD_LIBRARY(cblas STATIC IMPORTED)
SET_PROPERTY(TARGET cblas PROPERTY IMPORTED_LOCATION ${CBLAS_LIBRARIES})
# FIXME(gangliao): generate cblas target to track all high performance
# linear algebra libraries for cc_library(xxx SRCS xxx.c DEPS cblas)
SET(dummyfile ${CMAKE_CURRENT_BINARY_DIR}/cblas_dummy.c)
FILE(WRITE ${dummyfile} "const char * dummy = \"${dummyfile}\";")
IF(${CBLAS_PROVIDER} MATCHES MKL)
ADD_LIBRARY(cblas SHARED ${dummyfile})
ELSE()
ADD_LIBRARY(cblas STATIC ${dummyfile})
ENDIF()
TARGET_LINK_LIBRARIES(cblas ${CBLAS_LIBRARIES})
IF(NOT ${CBLAS_FOUND})
ADD_DEPENDENCIES(cblas extern_openblas)
LIST(APPEND external_project_dependencies cblas)
ELSE()
IF("${CBLAS_PROVIDER}" STREQUAL "MKLML")
ADD_DEPENDENCIES(cblas mklml)
ENDIF()
ENDIF(NOT ${CBLAS_FOUND})

@ -24,7 +24,6 @@ IF(WITH_PYTHON)
ENDIF(WITH_PYTHON)
SET(py_env "")
SET(USE_VIRTUALENV_FOR_TEST 1)
IF(PYTHONINTERP_FOUND)
find_python_module(pip REQUIRED)
find_python_module(numpy REQUIRED)

@ -9,6 +9,13 @@ function(CheckCompilerCXX11Flag)
if(${CMAKE_CXX_COMPILER_VERSION} VERSION_LESS 4.8)
message(FATAL_ERROR "Unsupported GCC version. GCC >= 4.8 required.")
endif()
if(NOT ANDROID)
# TODO(qijun) gcc 4.9 or later versions raise SEGV due to the optimization problem.
# Use Debug mode instead for now.
if(CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 4.9 OR CMAKE_CXX_COMPILER_VERSION VERSION_EQUAL 4.9)
set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE)
endif()
endif()
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang" OR CMAKE_CXX_COMPILER_ID STREQUAL "Clang")
# cmake >= 3.0 compiler id "AppleClang" on Mac OS X, otherwise "Clang"
# Apple Clang is a different compiler than upstream Clang which havs different version numbers.
@ -110,7 +117,7 @@ set(COMMON_FLAGS
-Wno-error=literal-suffix
-Wno-error=sign-compare
-Wno-error=unused-local-typedefs
-Wno-error=parentheses-equality # Warnings in Pybind11
-Wno-error=parentheses-equality # Warnings in pybind11
)
set(GPU_COMMON_FLAGS
@ -124,6 +131,7 @@ set(GPU_COMMON_FLAGS
-Wno-error=literal-suffix
-Wno-error=unused-local-typedefs
-Wno-error=unused-function # Warnings in Numpy Header.
-Wno-error=array-bounds # Warnings in Eigen::array
)
if (APPLE)
@ -152,7 +160,7 @@ set(CUDA_PROPAGATE_HOST_FLAGS OFF)
# Release/Debug flags set by cmake. Such as -O3 -g -DNDEBUG etc.
# So, don't set these flags here.
LIST(APPEND CUDA_NVCC_FLAGS -std=c++11)
LIST(APPEND CUDA_NVCC_FLAGS -std=c++11 --default-stream per-thread)
LIST(APPEND CUDA_NVCC_FLAGS --use_fast_math)
if(CMAKE_BUILD_TYPE STREQUAL "Debug")
@ -189,6 +197,7 @@ endif()
# Modern gpu architectures: Pascal
if (CUDA_VERSION VERSION_GREATER "8.0" OR CUDA_VERSION VERSION_EQUAL "8.0")
list(APPEND __arch_flags " -gencode arch=compute_60,code=sm_60")
list(APPEND CUDA_NVCC_FLAGS --expt-relaxed-constexpr)
endif()
# Custom gpu architecture

@ -187,7 +187,13 @@ function(cc_library TARGET_NAME)
endif()
# cpplint code style
add_style_check_target(${TARGET_NAME} ${cc_library_SRCS})
foreach(source_file ${cc_library_SRCS})
string(REGEX REPLACE "\\.[^.]*$" "" source ${source_file})
if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${source}.h)
list(APPEND cc_library_HEADERS ${CMAKE_CURRENT_SOURCE_DIR}/${source}.h)
endif()
endforeach()
add_style_check_target(${TARGET_NAME} ${cc_library_SRCS} ${cc_library_HEADERS})
else(cc_library_SRCS)
if (cc_library_DEPS)
@ -239,6 +245,14 @@ function(nv_library TARGET_NAME)
add_dependencies(${TARGET_NAME} ${nv_library_DEPS})
target_link_libraries(${TARGET_NAME} ${nv_library_DEPS})
endif()
# cpplint code style
foreach(source_file ${nv_library_SRCS})
string(REGEX REPLACE "\\.[^.]*$" "" source ${source_file})
if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${source}.h)
list(APPEND cc_library_HEADERS ${CMAKE_CURRENT_SOURCE_DIR}/${source}.h)
endif()
endforeach()
add_style_check_target(${TARGET_NAME} ${nv_library_SRCS} ${nv_library_HEADERS})
else(nv_library_SRCS)
if (nv_library_DEPS)
merge_static_libs(${TARGET_NAME} ${nv_library_DEPS})
@ -389,3 +403,16 @@ function(py_proto_compile TARGET_NAME)
protobuf_generate_python(py_srcs ${py_proto_compile_SRCS})
add_custom_target(${TARGET_NAME} ALL DEPENDS ${py_srcs})
endfunction()
function(py_test TARGET_NAME)
if(WITH_TESTING)
set(options STATIC static SHARED shared)
set(oneValueArgs "")
set(multiValueArgs SRCS DEPS)
cmake_parse_arguments(py_test "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})
add_test(NAME ${TARGET_NAME}
COMMAND env PYTHONPATH=${PADDLE_PYTHON_BUILD_DIR}/lib-python
python2 ${py_test_SRCS}
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
endif()
endfunction()

@ -12,7 +12,7 @@ set(CPACK_PACKAGE_DESCRIPTION "")
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libpython2.7-dev, libstdc++6, python-pip, curl, libgfortran3, python-pip-whl")
set(CPACK_DEBIAN_PACKAGE_SECTION Devel)
set(CPACK_DEBIAN_PACKAGE_VERSION ${PADDLE_VERSION})
set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${PROJ_ROOT}/paddle/scripts/deb/postinst")
set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${PADDLE_SOURCE_DIR}/paddle/scripts/deb/postinst")
#set(CPACK_GENERATOR "DEB")
# Start cpack
include (CMakePackageConfigHelpers)

@ -118,7 +118,6 @@ endfunction()
macro(add_unittest_without_exec TARGET_NAME)
add_executable(${TARGET_NAME} ${ARGN})
link_paddle_test(${TARGET_NAME})
add_style_check_target(${TARGET_NAME} ${ARGN})
endmacro()
# add_unittest
@ -142,17 +141,20 @@ endmacro()
function(create_resources res_file output_file)
add_custom_command(
OUTPUT ${output_file}
COMMAND python ARGS ${PROJ_ROOT}/cmake/make_resource.py ${res_file} ${output_file}
DEPENDS ${res_file} ${PROJ_ROOT}/cmake/make_resource.py)
COMMAND python ARGS ${PADDLE_SOURCE_DIR}/cmake/make_resource.py ${res_file} ${output_file}
DEPENDS ${res_file} ${PADDLE_SOURCE_DIR}/cmake/make_resource.py)
endfunction()
# Create a python unittest using run_python_tests.sh,
# which takes care of making correct running environment
function(add_python_test TEST_NAME)
add_test(NAME ${TEST_NAME}
COMMAND env PADDLE_PACKAGE_DIR=${PADDLE_PYTHON_PACKAGE_DIR}
bash ${PROJ_ROOT}/paddle/scripts/run_python_tests.sh
${USE_VIRTUALENV_FOR_TEST} ${PYTHON_EXECUTABLE} ${ARGN}
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
foreach(arg ${ARGN})
get_filename_component(py_fn ${arg} NAME_WE)
set(TRG_NAME ${TEST_NAME}_${py_fn})
add_test(NAME ${TRG_NAME}
COMMAND env PYTHONPATH=${PADDLE_PYTHON_PACKAGE_DIR}
python2 ${arg}
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
endforeach()
endfunction()

@ -4,7 +4,7 @@ set(tmp_version "HEAD")
while ("${PADDLE_VERSION}" STREQUAL "")
execute_process(
COMMAND ${GIT_EXECUTABLE} describe --tags --abbrev=0 ${tmp_version}
WORKING_DIRECTORY ${PROJ_ROOT}
WORKING_DIRECTORY ${PADDLE_SOURCE_DIR}
OUTPUT_VARIABLE GIT_TAG_NAME
RESULT_VARIABLE GIT_RESULT
ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)

@ -104,6 +104,11 @@ cross_channel_norm
------------------
.. autoclass:: paddle.v2.layer.cross_channel_norm
:noindex:
row_l2_norm
-----------
.. autoclass:: paddle.v2.layer.row_l2_norm
:noindex:
Recurrent Layers
================
@ -198,6 +203,10 @@ identity_projection
.. autoclass:: paddle.v2.layer.identity_projection
:noindex:
slice_projection
-------------------
.. autoclass:: paddle.v2.layer.slice_projection
:noindex:
table_projection
----------------
@ -248,6 +257,16 @@ seq_concat
.. autoclass:: paddle.v2.layer.seq_concat
:noindex:
kmax_sequence_score
-------------------
.. autoclass:: paddle.v2.layer.kmax_sequence_score
:noindex:
sub_nested_seq
--------------
.. autoclass:: paddle.v2.layer.sub_nested_seq
:noindex:
Reshaping Layers
================
@ -316,6 +335,11 @@ scaling
.. autoclass:: paddle.v2.layer.scaling
:noindex:
clip
----
.. autoclass:: paddle.v2.layer.clip
:noindex:
slope_intercept
---------------
.. autoclass:: paddle.v2.layer.slope_intercept

@ -0,0 +1,146 @@
## Auto Gradient Checker Design
## Backgraound
- Operator forward computing is easy to check if the result is right because it has a clear definition. **But** backpropagation is a notoriously difficult algorithm to debug and get right:
- 1. you should get the right backpropagation formula according to the forward computation.
- 2. you should implement it right in CPP.
- 3. it's difficult to prepare test data.
- Auto gradient check gets a numeric gradient by forward Operator and use it as a reference of the backward Operator's result. It has several advantages:
- 1. numeric gradient checker only need forward operator.
- 2. user only need to prepare the input data for forward Operator.
## Mathematical Theory
The following two document from stanford has a detailed explanation of how to get numeric gradient and why it's useful.
- [Gradient checking and advanced optimization(en)](http://deeplearning.stanford.edu/wiki/index.php/Gradient_checking_and_advanced_optimization)
- [Gradient checking and advanced optimization(cn)](http://ufldl.stanford.edu/wiki/index.php/%E6%A2%AF%E5%BA%A6%E6%A3%80%E9%AA%8C%E4%B8%8E%E9%AB%98%E7%BA%A7%E4%BC%98%E5%8C%96)
## Numeric Gradient Implementation
### Python Interface
```python
def get_numeric_gradient(op,
input_values,
output_name,
input_to_check,
delta=0.005,
local_scope=None):
"""
Get Numeric Gradient for an operator's input.
:param op: C++ operator instance, could be an network
:param input_values: The input variables. Should be an dictionary, key is
variable name. Value is numpy array.
:param output_name: The final output variable name.
:param input_to_check: The input variable need to get gradient.
:param delta: The perturbation value for numeric gradient method. The
smaller delta is, the more accurate result will get. But if that delta is
too small, it could occur numerical stability problem.
:param local_scope: The local scope used for get_numeric_gradient.
:return: The gradient array in numpy format.
"""
```
### Explaination:
- Why need `output_name`
- One Operator may have multiple Output, you can get independent gradient from each Output. So user should set one output to calculate.
- Why need `input_to_check`
- One operator may have multiple inputs. Gradient Op can calculate the gradient of these Inputs at the same time. But Numeric Gradient needs to calculate them one by one. So `get_numeric_gradient` is designed to calculate the gradient for one input. If you need to compute multiple inputs, you can call `get_numeric_gradient` multiple times.
### Core Algorithm Implementation
```python
# we only compute gradient of one element each time.
# we use a for loop to compute the gradient of every element.
for i in xrange(tensor_size):
# get one input element throw it's index i.
origin = tensor_to_check.get_float_element(i)
# add delta to it, run op and then get the sum of the result tensor.
x_pos = origin + delta
tensor_to_check.set_float_element(i, x_pos)
y_pos = get_output()
# plus delta to this element, run op and get the sum of the result tensor.
x_neg = origin - delta
tensor_to_check.set_float_element(i, x_neg)
y_neg = get_output()
# restore old value
tensor_to_check.set_float_element(i, origin)
# compute the gradient of this element and store it into a numpy array.
gradient_flat[i] = (y_pos - y_neg) / delta / 2
# reshape the gradient result to the shape of the source tensor.
return gradient_flat.reshape(tensor_to_check.get_dims())
```
## Auto Graident Checker Framework
Each Operator Kernel has three kinds of Gradient:
- 1. Numeric Gradient
- 2. CPU Operator Gradient
- 3. GPU Operator Gradient(if supported)
Numeric Gradient Only relies on forward Operator. So we use Numeric Gradient as the reference value.
- 1. calculate the numeric gradient.
- 2. calculate CPU kernel Gradient with the backward Operator and compare it with the numeric gradient.
- 3. calculate GPU kernel Gradient with the backward Operator and compare it with the numeric gradient.(if support GPU)
#### Python Interface
```python
def check_grad(self,
forward_op,
input_vars,
inputs_to_check,
output_name,
no_grad_set=None,
only_cpu=False,
max_relative_error=0.005):
"""
:param forward_op: used to create backward_op
:param input_vars: numpy value of input variable. The following
computation will use these variables.
:param inputs_to_check: inputs var names that should check gradient.
:param output_name: output name that used to
:param max_relative_error: The relative tolerance parameter.
:param no_grad_set: used when create backward ops
:param only_cpu: only compute and check gradient on cpu kernel.
:return:
"""
```
### How to check if two numpy array is close enough?
if `abs_numeric_grad` is nearly zero, then use abs error for numeric_grad, not relative
```python
numeric_grad = ...
operator_grad = numpy.array(scope.find_var(grad_var_name(name)).get_tensor())
abs_numeric_grad = numpy.abs(numeric_grad)
# if abs_numeric_grad is nearly zero, then use abs error for numeric_grad, not relative
# error.
abs_numeric_grad[abs_numeric_grad < 1e-3] = 1
diff_mat = numpy.abs(abs_numeric_grad - operator_grad) / abs_numeric_grad
max_diff = numpy.max(diff_mat)
```
#### Notes
1The Input data for auto gradient checker should be reasonable to avoid numeric problem.
#### Refs:
- [Gradient checking and advanced optimization(en)](http://deeplearning.stanford.edu/wiki/index.php/Gradient_checking_and_advanced_optimization)
- [Gradient checking and advanced optimization(cn)](http://ufldl.stanford.edu/wiki/index.php/%E6%A2%AF%E5%BA%A6%E6%A3%80%E9%AA%8C%E4%B8%8E%E9%AB%98%E7%BA%A7%E4%BC%98%E5%8C%96)

@ -0,0 +1,101 @@
# Alalysis of large model distributed training in Paddle
***NOTE: This is only some note for how we implemeted this scheme in V1, not a new design.***
## What is it
We often encounter cases that the embedding layer parameters(sparse) are so large that we can not store it in the trainer's memory when training. So we need to put them to several servers, and fetch them row by row instead of fetch all of the parameters.
## How to use
Specify command-line argument like `--loadsave_parameters_in_pserver=true --ports_num_for_sparse=1 --use_old_updater=1` when starting the paddle trainer. And also add something like `--ports_num_for_sparse=1 --pserver_num_threads=5` when starting pserver processes.
Accrodingly, configure your embedding layers like:
```python
SPARSE_REMOTE=True
w1 = data_layer(name="w1", size=dict_size)
emb1 = embedding_layer(input=w1, size=32, param_attr=ParameterAttribute(sparse_update=SPARSE_REMOTE))
w2 = data_layer(name="w2", size=dict_size)
emb2 = embedding_layer(input=w2, size=32, param_attr=ParameterAttribute(sparse_update=SPARSE_REMOTE))
...
```
## Implementation details
```c++
enum MatType {
MAT_NORMAL,
MAT_NORMAL_SHARED,
MAT_VALUE_SHARED,
MAT_SPARSE_ROW_IDS,
MAT_SPARSE_ROW_AUTO_GROW,
MAT_CACHE_ROW,
MAT_SPARSE_ROW,
MAT_SPARSE_ROW_PREFETCH,
MAT_SPARSE_ROW_PREFETCH_FULL_SIZE,
};
```
`MAT_SPARSE_ROW_PREFETCH` is what we use when configured to fetch only row of matrix when training.
In `trainer_internal.cpp:L93 trainOneBatch`:
```c++
if (config_->getOptConfig().use_sparse_remote_updater()) {
REGISTER_TIMER("prefetch");
gradientMachine_->prefetch(inArgs);
parameterUpdater_->getParametersRemote();
}
```
When doing actual network forward and backward, at the beginning of each batch, the trainer will try to download one row of data from pserver.
In `trainer/RemoteParameterUpdater.cpp`: `parameterUpdater_->getParametersRemote();`:
```c++
if (fullSize) {
...
} else {
getParams = [&] {
parameterClient_->getParameterSparse(
/* recvParameterType= */ PARAMETER_VALUE, sendBackParameterType);
};
applyL1 = [](Parameter& para, real decayRate) {
para.getMat(PARAMETER_VALUE)->applyL1(/*lr=*/1.0f, decayRate);
};
}
```
Calling `parameterClient_->getParameterSparse` will do remote call to pserver's `getParameterSparse`:
```c++
void ParameterServer2::getParameterSparse(const SendParameterRequest& request,
std::vector<Buffer>& inputBuffers,
SendParameterResponse* response,
std::vector<Buffer>* outputBuffers) {
(void)inputBuffers;
auto& buffer = *readWriteBuffer_;
size_t numReals = 0;
for (const auto& block : request.blocks()) {
numReals += getParameterConfig(block).dims(1);
}
buffer.resize(numReals);
VLOG(3) << "pserver: getParameterSparse, numReals=" << numReals;
ReadLockGuard guard(parameterMutex_);
size_t offset = 0;
for (const auto& block : request.blocks()) {
size_t width = getParameterConfig(block).dims(1);
Buffer buf = {buffer.data() + offset, width};
int type = request.send_back_parameter_type();
sendBackParameterSparse(block, type, response, &buf, width, outputBuffers);
offset += width;
}
}
```
`getParameterConfig(block).dims(1)` returns the width of the current "parameter block"(a shard of parameter object),
then `getParameterSparse` remote call returns only one row of data to the client.

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