Merge branch 'develop' into core_inference_example

cross_channel_norm
Liu Yiqun 7 years ago
commit cd7d0f850b

@ -93,6 +93,15 @@ Test on batch size 1, 2, 4, 8, 16 on Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
| MKLML | 22.74 | 41.56 | 81.22 | 133.47 | 210.53 |
| MKL-DNN | 175.10 | 272.92 | 450.70 | 512.00 | 600.94 |
- Alexnet
| BatchSize | 1 | 2 | 4 | 8 | 16 |
|-----------|--------|--------|--------|--------|--------|
| OpenBLAS | | | | | |
| MKLML | 21.32 | 36.55 | 73.06 | 131.15 | 192.77 |
| MKL-DNN | 442.91 | 656.41 | 719.10 | 847.68 | 850.51 |
chart TBD
### Laptop
TBD

@ -19,7 +19,11 @@ args = {
'num_samples': num_samples
}
define_py_data_sources2(
"train.list", None, module="provider", obj="process", args=args)
"train.list" if not is_infer else None,
"test.list" if is_infer else None,
module="provider",
obj="process",
args=args)
settings(
batch_size=batch_size,

@ -8,15 +8,19 @@ function clock_to_seconds() {
}
function infer() {
unset OMP_NUM_THREADS MKL_NUM_THREADS OMP_DYNAMIC KMP_AFFINITY
topology=$1
layer_num=$2
bs=$3
thread=`nproc`
if [ $thread -gt $bs ]; then
thread=$bs
trainers=`nproc`
if [ $trainers -gt $bs ]; then
trainers=$bs
fi
log="logs/infer-${topology}-${layer_num}-${thread}openblas-${bs}.log"
log="logs/infer-${topology}-${layer_num}-${trainers}openblas-${bs}.log"
threads=$((`nproc` / trainers))
if [ $threads -eq 0 ]; then
threads=1
fi
export OPENBLAS_NUM_THREADS=$threads
models_in="models/${topology}-${layer_num}/pass-00000/"
if [ ! -d $models_in ]; then
@ -28,7 +32,7 @@ function infer() {
--config="${topology}.py" \
--use_mkldnn=False \
--use_gpu=False \
--trainer_count=$thread \
--trainer_count=$trainers \
--log_period=$log_period \
--config_args="batch_size=${bs},layer_num=${layer_num},is_infer=True,num_samples=256" \
--init_model_path=$models_in \

@ -1,7 +1,7 @@
set -e
function train() {
unset OMP_NUM_THREADS MKL_NUM_THREADS OMP_DYNAMIC KMP_AFFINITY
export OPENBLAS_NUM_THREADS=1
topology=$1
layer_num=$2
bs=$3

@ -0,0 +1,156 @@
# Backward Building
## Motivation
In Neural Network, most models are solved by the backpropagation algorithm(known as **BP**) at present. Technically, BP calculates the gradient of the loss function, then propagates it back through the networks following the chain rule. However, when configuring the model structure, users do not need to define the backward part. So a mechanism is required by the framework which can complete the model's backward part automatically according to the given forward part.
When implementing a specific `op`, the developer is also asked to implement its backward version, called `grad_op`. A `grad_op` takes gradients of its corresponding `op`'s outputs, and calculate gradients of the `op`'s inputs. During the building of a model's backward part, the framework creates each forward `op`'s `grad_op`, and then string them together in reverse order of forwarding part. In this way, gradients spread from the end to the beginning of the model, in another word, from the loss to parameters.
## Challenges
The motivation of backward building is apparent. However, implementation it correctly is not so easy. In the **Fluid** design, a deep learning model is described by `Program`, `Block`, `Op` and `Variable`. The `Block` itself can be nested. It means that the `op`s and `variable`s are scattered across different blocks rather than all be gathered in a single graph. Our backward building algorithm shall visit blocks in recursive order and be able to insert `grad_op`s and new created `variable`s into the right place.
## Usage
Although the whole algorithm is comprised of many functions, only one is exposed as API:
```python
def append_backward(loss, parameter_list=None, no_grad_set=None):
"""
Append backward part to main_program
Args:
loss(Variable): The variable generated by the cost function.
parameter_list(list): Parameters that need to be updated by optimizers.
If None, it means all parameters need to be updated.
no_grad_set(set): Variables that have no gradients in Block 0.
If None, the set will be generated inside the function and
contains all variables with `step_gradient=True` from all blocks.
Return:
(list[Variable]): list of (parameters, gradients) pair.
"""
```
By invoking this API, the framework appends backward part of the program where the `loss` is. It takes three arguments. `loss` means the final loss value. It must be a scalar and is usually the output of the loss layer. It is also where the gradient generated and backpropagation starts. `parameter_list` marks all parameters needs updating. If it's `None`, all parameter will be updated by optimizers. `no_grad_set` marks variables without gradient. if all outputs of some `grad_op` are in `no_grad_set`, the `grad_op` will not be run.
This API will be invoked automatically before optimizer building.
As a result, in most cases, users do not need to invoke the API by themselves to append backward part.
## Implementation
The implementation of backward building algorithm is in `backward.py` file. The whole algorithm can be divided into two independent parts: creating `grad_op`s and creating new variables.
### Creating `grad_op`s
The creating of `grad_op`s is implemented by:
```python
def _append_backward_ops_(target,
block,
target_block,
no_grad_dict,
grad_to_var):
"""
Create all grad ops, and insert them into given block
Args:
target(Variable): the target variable of forward pass
block(Block): the block where forward ops are
target_block(Block): the block which is going to hold new generated grad ops
no_grad_dict(dict):
key(int) block index
val(set) a set of varibale names. These varibales have no gradient
grad_to_var(dict)(output argument):
key(str): grad variable name
val(str): corresponding forward variable name
"""
```
Given a `block`, the function will traverses all `op`s in this block in reverse order, gets corresponding `grad_op` from the C++ core via `core.get_grad_op_desc()`, then append it to `target_block`.
However, some specific `op`(e.g. `while_op`, `if_else_op`) can hold its own sub-block. For these sub-blocks contains `op`s as well, the `grad_op` creating should be recursive.
During the reverse traversal, we check each `op` whether it has an attribute named `sub_block`. If so, it means there is a sub-block and we need to deal with it first. After creating a new block whose father is the one in `op`'s attribute, we invoke `_append_backward_ops_()` recursively, assigning the new block to parameter `target_block` and the one in `op`'s attribute to `block`. The *pseudo-code* shows this process:
```
******* pseudo-code ********
for op in reversed(block.ops):
if op has an attribute named 'sub_block':
Get the sub-block(`s_block`) from op's attribute.
Create a new block(`grad_s_block`), whose father is `s_block`.
Invoke _append_backward_ops_(), with `block=s_block` and `target_block=grad_s_block`
Invoke `core.get_grad_op_desc()` to get op's grad_op.
Insert name correspondings between variables and their gradients of the grad_op to grad_to_var
Assign grad_s_block to grad_op as it's 'sub_block' attribute.
Append grad_op to current target_block.
```
The first invoking of `_append_backward_ops_()` is initiated by `append_backward()`, in which parameters `block` and `target_block` are all assigned with root block(the block with index 0).
### Corner Cases of `grad_op` Creating
In the previous section, we show the regular process of `grad_op` creating. However, in some corner cases, the conventional algorithm is not enough to get the correct result and appending handling is required. These additional processes run after the algorithm mentioned above and do some special adjusts on its output `grad_op`s.
#### Shared Variables
If a variable is read by more than one `op` in the forward pass, its gradient is likely to be written by more than one `grad_op`s in the next backward pass. To make the gradient result being the sum of all `grad_op`s' outputs instead of the last running one, we assign each output with a temporary variable and then add a `sum_op` to add them up.
For the debug convenience, if the final gradient name is `w@GRAD`, it's corresponding temporary variables will be named as `w@GRAD@RENAME@0`, `w@GRAD@RENAME@1`...
See function `_addup_repetitive_outputs_` in `backward.py` for implementation details.
#### No Gradient Variables
In our framework, variables can be marked as *no_gradient*, it means that the gradient of this variable is unnecessary and can be considered as zero in model training. Apparently, when all the outputs of some `grad_op` are marked as *no_gradient*, the `grad_op` itself can be skipped in backward pass.
But these unnecessary gradients still need to be creating and initialized by something, otherwise following `grad_op`s who take these gradients as inputs take the risk of using uninitialized memory. In our code, we employ `fill_zeros_like_op` to initialize them as all zeros.
This features are implemented in function `_remove_no_grad_branch_`. It checks new created `grad_op`s one-by-one, removes whose outputs are all in `no_grad_set` or inserts `fill_zeros_like_op` when its necessary. We can get the `no_grad_set` from the `_append_backward_ops_` argument `no_grad_dict` or generate it on the fly by scanning all variables' `no_gradient` attribute(True or False).
### Creating Backward Variables
Up to now, we have completed all creating and adjusting jobs of `grad_op`s. However, backward variables have not been created. Now they are only represented by `grad_op`'s input and output arguments. The backward variable creating job will be done by:
```python
def _append_backward_vars_(block,
start_op_idx,
grad_to_var,
grad_info_map):
"""
Create new variables required by backward pass.
Args:
block(Block): the block where new variables will be created
start_op_idx(int): Only variables required by ops in block.ops[start_op_idx : ] will be created
grad_to_var(dict):
key(str): grad variable name
val(str): corresponding forward variable name
In most cases, this dict is generated by _append_backward_ops_()
grad_info_map(dict)(output argument):
key(str): forward variable name
val(tuple): a tuple of (str, int), str is the corresponding grad name, int is the block index
"""
```
Given a `block`, this function traverses all the `grad_op`s in it(The argument `start_op_idx` indicates where the grad_op sequence starts.) and creates all the uncreated outputs. The *pseudo-code* shows this process:
```
for op in block.ops[start_op_idx : ]:
if op has an attribute named 'sub_block':
Get the sub-block(`s_block`) from op's attribute.
Invoke _append_backward_vars_(), with `block=s_block`
for var_name in op.all_output_names():
if block.has_var_recursive(var_name) or var_name is the name of empty variable:
continue
create a new variable named 'var_name' in block
if grad_to_var.has_key(var_name):
set grad_info_map[grad_to_var[var_name]] as a tuple of (var_name. block)
do op's var type inference
do op's shape inference
```

Before

Width:  |  Height:  |  Size: 21 KiB

After

Width:  |  Height:  |  Size: 21 KiB

Before

Width:  |  Height:  |  Size: 24 KiB

After

Width:  |  Height:  |  Size: 24 KiB

@ -15,7 +15,7 @@
获取PaddlePaddle的Docker镜像
------------------------------
执行下面的命令获取最新的PaddlePaddle Docker镜像
执行下面的命令获取最新的PaddlePaddle Docker镜像版本为cpu_avx_mkl
.. code-block:: bash
@ -27,7 +27,7 @@
docker pull docker.paddlepaddle.org/paddle
下载GPU版本的Docker镜像
下载GPU版本cuda8.0_cudnn5_avx_mkl的Docker镜像
.. code-block:: bash
@ -54,7 +54,7 @@
.. _docker_run:
在Docker中执行PaddlePaddle训练程序
------------------------------
----------------------------------
假设您已经在当前目录(比如在/home/work编写了一个PaddlePaddle的程序 :code:`train.py` (可以参考
`PaddlePaddleBook <http://www.paddlepaddle.org/docs/develop/book/01.fit_a_line/index.cn.html>`_
@ -82,7 +82,7 @@
.. _docker_run_book:
使用Docker启动PaddlePaddle Book教程
------------------------------
-----------------------------------
使用Docker可以快速在本地启动一个包含了PaddlePaddle官方Book教程的Jupyter Notebook可以通过网页浏览。
PaddlePaddle Book是为用户和开发者制作的一个交互式的Jupyter Notebook。

@ -16,7 +16,7 @@ After you've read above tutorials you may proceed the following steps.
Pull PaddlePaddle Docker Image
------------------------------
Run the following command to download the latest Docker images:
Run the following command to download the latest Docker images, the version is cpu_avx_mkl:
.. code-block:: bash
@ -28,7 +28,7 @@ For users in China, we provide a faster mirror:
docker pull docker.paddlepaddle.org/paddle
Download GPU version images:
Download GPU version (cuda8.0_cudnn5_avx_mkl) images:
.. code-block:: bash
@ -58,7 +58,7 @@ and run:
.. _docker_run:
Launch your training program in Docker
------------------------------
--------------------------------------
Assume that you have already written a PaddlePaddle program
named :code:`train.py` under directory :code:`/home/work` (refer to

@ -11,14 +11,14 @@ PaddlePaddle可以使用常用的Python包管理工具
------------------------------
执行下面的命令即可在当前机器上安装PaddlePaddle的运行时环境并自动下载安装依赖软件。
执行下面的命令即可在当前机器上安装PaddlePaddle的运行时环境并自动下载安装依赖软件版本为cpu_avx_openblas
.. code-block:: bash
pip install paddlepaddle
如果需要安装支持GPU的版本需要执行
如果需要安装支持GPU的版本cuda7.5_cudnn5_avx_openblas,需要执行:
.. code-block:: bash

@ -12,14 +12,14 @@ Install Using pip
------------------------------
Run the following command to install PaddlePaddle on the current
machine, it will also download requirements.
machine, it will also download requirements, the version is cpu_avx_openblas.
.. code-block:: bash
pip install paddlepaddle
If you wish to install GPU version, just run:
If you wish to install GPU version (cuda7.5_cudnn5_avx_openblas), just run:
.. code-block:: bash

@ -7,13 +7,13 @@
++++++++
PaddlePaddle支持使用pip快速安装目前支持CentOS 6以上, Ubuntu 14.04以及MacOS 10.12并安装有Python2.7。
执行下面的命令完成快速安装:
执行下面的命令完成快速安装版本为cpu_avx_openblas
.. code-block:: bash
pip install paddlepaddle
如果需要安装支持GPU的版本需要执行
如果需要安装支持GPU的版本cuda7.5_cudnn5_avx_openblas,需要执行:
.. code-block:: bash

@ -8,13 +8,13 @@ Quick Install
You can use pip to install PaddlePaddle with a single command, supports
CentOS 6 above, Ubuntu 14.04 above or MacOS 10.12, with Python 2.7 installed.
Simply run the following command to install:
Simply run the following command to install, the version is cpu_avx_openblas:
.. code-block:: bash
pip install paddlepaddle
If you need to install GPU version, run:
If you need to install GPU version (cuda7.5_cudnn5_avx_openblas), run:
.. code-block:: bash

@ -5,10 +5,18 @@ cc_library(ddim SRCS ddim.cc DEPS eigen3)
cc_test(ddim_test SRCS ddim_test.cc DEPS ddim)
nv_test(dim_test SRCS dim_test.cu DEPS ddim)
cc_library(tensor SRCS tensor.cc DEPS ddim place paddle_memory device_context)
if (WITH_GPU)
nv_library(tensor SRCS tensor.cc tensor_util.cu DEPS ddim place paddle_memory device_context framework_proto)
else()
cc_library(tensor SRCS tensor.cc tensor_util.cc DEPS ddim place paddle_memory device_context framework_proto)
endif ()
cc_test(tensor_test SRCS tensor_test.cc DEPS tensor)
cc_test(tensor_util_test SRCS tensor_util_test.cc DEPS tensor)
if (WITH_GPU)
nv_test(tensor_util_test SRCS tensor_util_test.cc tensor_util_test.cu DEPS tensor)
else()
cc_test(tensor_util_test SRCS tensor_util_test.cc DEPS tensor)
endif()
cc_test(eigen_test SRCS eigen_test.cc DEPS tensor)

@ -1,100 +0,0 @@
# Operator/expression 's Backward
## Motivation
In Neural Network, most models are solved by the backpropagation algorithm(known as **BP**) at present. Technically, BP calculates the gradient of the loss function, then propagates it back through the networks following the chain rule. Hence we need a module that chains the gradient operators/expressions together to construct the backward pass. Every forward network needs a backward network to construct the full computation graph. The operator/expression's backward pass will be generated with respect to the forward pass.
## Implementation
In this design doc, we exported only one API for generating the backward pass.
```c++
std::unique_ptr<OperatorBase> Backward(const OperatorBase& forwardOp,
const std::unordered_set<std::string>& no_grad_vars);
```
The implementation behind it can be divided into two parts, **Backward Operator Creating** and **Backward Operator Building**.
### Backward Operator Registry
A backward network is built up with several backward operators. Backward operators take forward operators' inputs, outputs, and output gradients and then calculate its input gradients.
| | forward operator | backward operator
| ---------------------- | ---------------- |------------------------- |
| **Operator::inputs_** | Inputs | Inputs, Outputs, OutputGradients |
| **Operator::outputs_** | Outputs | InputGradients |
In most cases, there is a one-to-one relation between the forward and backward operators. These relations are recorded by a global hash map(`OpInfoMap`). To follow the philosophy of minimum core and to make operators pluggable, the registry mechanism is introduced.
For example, we have `mul_op`, and we can register its information and corresponding backward operator by the following macro:
```cpp
REGISTER_OP(mul, MulOp, MulOpMaker, mul_grad, MulOpGrad);
```
`mul` is the operator's type. `MulOp` and `MulOpMaker` are the operator class and the operator maker class respectively.
`mul_grad` is the type of backward operator, and `MulOpGrad` is its class name.
### Backward Opeartor Creating
Given a certain forward operator, we can get its corresponding backward operator by calling:
```cpp
OperatorBase* bwd_op = BuildGradOp(const OperatorBase* fwd_op);
```
The function `BuildGradOp` will sequentially execute following processes:
1. Get the `type_` of given forward operator, and then get the corresponding backward operator's type by looking up the `OpInfoMap`.
2. Build two maps named `inputs` and `outputs` to temporarily store backward operator's inputs and outputs. Copy forward operator's `inputs_` and `outputs_` to map `inputs`, except these, are not necessary for gradient computing.
3. Add forward inputs' gradient variables into map `output`, adding forward outputs' gradient variables into map `input`.
4. Building backward operator with `inputs`, `outputs` and forward operator's attributes.
### Backward Network Building
A backward network is a series of backward operators. The main idea of building a backward network is creating backward operators in the inverted sequence and appending them together one by one. There are some corner cases that need special processing.
1. Op
When the input forward network is an Op, return its gradient Operator immediately. If all of its outputs are in no gradient set, then return a special `NOP`.
2. NetOp
In our design, the network itself is also a kind of operator(**NetOp**). So the operators contained by a big network may be some small network. When the input forward network is a NetOp, it needs to call the sub NetOp/Operators backward function recursively. During the process, we need to collect the `OutputGradients` name according to the forward NetOp.
3. RnnOp
RnnOp is a nested stepnet operator. Backward module needs to recusively call `Backward` for every stepnet.
4. Sharing Variables
As illustrated in the figure 1 and figure 2, two operators share the same variable name **W@GRAD**, which will overwrite their shared input variable.
<p align="center">
<img src="./images/duplicate_op.png" width="50%" ><br/>
Figure 1. Sharing variables in operators.
</p>
Sharing variable between operators or same input variable used in multiple operators can lead to duplicate gradient variables. As illustrated in figure 2, we need to rename the gradient names recursively and add a generic add operator to prevent overwriting.
<p align="center">
<img src="images/duplicate_op2.png" width="40%" ><br/>
Figure 2. Replace sharing variable's gradient with `Add` operator.
</p>
Because the framework finds variables according to their names, we need to rename the output links. We add an integer suffix to represent its position in the clockwise direction.
5. Part of the Gradient is Zero.
In the whole graph, there is some case of that one operator's gradient is not needed, but its input's gradient is a dependency link of other operator, we need to fill a same shape gradient matrix in the position. In our implementation, we insert a special `fillZeroLike` operator.
Follow these rules above, then collect the sub graph `OutputGradients`/`InputGradients` as the NetOp's and return it.

@ -27,9 +27,8 @@ limitations under the License. */
namespace paddle {
namespace framework {
using DataTransformFn =
std::function<void(const std::vector<platform::DeviceContext*> ctx,
const Variable& in, Variable* out)>;
using DataTransformFn = std::function<void(const platform::DeviceContext* ctx,
const Variable& in, Variable* out)>;
using KernelTypePair = std::pair<OpKernelType, OpKernelType>;
struct KernelTypePairHash {

@ -54,18 +54,18 @@ auto kernel1 = GenFromBit({0, 0, 0, 1});
auto kernel2 = GenFromBit({0, 0, 1, 0});
auto kernel3 = GenFromBit({0, 0, 1, 1});
void TransDataType_t(std::vector<platform::DeviceContext*> ctx,
const Variable& in, Variable* out) {
void TransDataType_t(const platform::DeviceContext* ctx, const Variable& in,
Variable* out) {
test_value++;
}
void TransDataLayout_t(std::vector<platform::DeviceContext*> ctx,
const Variable& in, Variable* out) {
void TransDataLayout_t(const platform::DeviceContext* ctx, const Variable& in,
Variable* out) {
test_value--;
}
void TransLibraryType_t(std::vector<platform::DeviceContext*> ctx,
const Variable& in, Variable* out) {
void TransLibraryType_t(const platform::DeviceContext* ctx, const Variable& in,
Variable* out) {
test_value += 2;
}
@ -83,7 +83,8 @@ TEST(DataTransform, Register) {
using namespace paddle::platform;
auto& instance = DataTransformFnMap::Instance();
std::vector<DeviceContext*> ctx;
ASSERT_EQ(instance.Map().size(), 3UL);
DeviceContext* ctx = nullptr;
paddle::framework::Variable in;
paddle::framework::Variable out;

@ -14,18 +14,17 @@ limitations under the License. */
#include "paddle/framework/executor.h"
#include <algorithm>
#include <iostream>
#include <memory>
#include <set>
#include <vector>
#include "gflags/gflags.h"
#include "paddle/framework/feed_fetch_type.h"
#include "paddle/framework/lod_rank_table.h"
#include "paddle/framework/lod_tensor.h"
#include "paddle/framework/lod_tensor_array.h"
#include "paddle/framework/op_registry.h"
#include "paddle/framework/scope.h"
DEFINE_bool(check_nan_inf, false,
"Checking whether operator produce NAN/INF or not. It will be "
"extremely slow so please use this flag wisely.");
namespace paddle {
namespace framework {
@ -58,6 +57,19 @@ static void CreateTensor(Variable* var, proto::VarDesc::VarType var_type) {
}
}
static void CheckTensorNANOrInf(const std::string& name,
const framework::Tensor& tensor) {
if (tensor.memory_size() == 0) {
return;
}
if (tensor.type().hash_code() != typeid(float).hash_code() &&
tensor.type().hash_code() != typeid(double).hash_code()) {
return;
}
PADDLE_ENFORCE(!framework::HasInf(tensor), "Tensor %s has Inf", name);
PADDLE_ENFORCE(!framework::HasNAN(tensor), "Tensor %s has NAN", name);
}
void Executor::Run(const ProgramDesc& pdesc, Scope* scope, int block_id,
bool create_local_scope, bool create_vars) {
// TODO(tonyyang-svail):
@ -101,6 +113,15 @@ void Executor::Run(const ProgramDesc& pdesc, Scope* scope, int block_id,
auto op = paddle::framework::OpRegistry::CreateOp(*op_desc);
VLOG(3) << op->DebugString();
op->Run(*local_scope, place_);
if (FLAGS_check_nan_inf) {
for (auto& vname : op->OutputVars(true)) {
auto* var = local_scope->FindVar(vname);
if (var == nullptr) continue;
if (var->IsType<framework::LoDTensor>()) {
CheckTensorNANOrInf(vname, var->Get<framework::LoDTensor>());
}
}
}
}
if (create_vars && create_local_scope) {
scope->DeleteScope(local_scope);

@ -189,62 +189,16 @@ void AppendLoD(LoD *lod, const LoD &lod_length) {
void SerializeToStream(std::ostream &os, const LoDTensor &tensor,
const platform::DeviceContext &dev_ctx) {
// TODO(typhoonzero): serialize to ostream
{ // the 1st field, uint32_t version
{ // the 1st field, uint32_t version for LoDTensor
constexpr uint32_t version = 0;
os.write(reinterpret_cast<const char *>(&version), sizeof(version));
}
{ // the 2nd field, tensor description
// int32_t size
// void* protobuf message
proto::TensorDesc desc;
desc.set_data_type(framework::ToDataType(tensor.type()));
auto dims = framework::vectorize(tensor.dims());
auto *pb_dims = desc.mutable_dims();
pb_dims->Resize(static_cast<int>(dims.size()), 0);
std::copy(dims.begin(), dims.end(), pb_dims->begin());
int32_t size = desc.ByteSize();
os.write(reinterpret_cast<const char *>(&size), sizeof(size));
auto out = desc.SerializeAsString();
os.write(out.data(), size);
}
{ // the 3rd field, tensor data
uint64_t size = tensor.memory_size();
auto *data_ptr = tensor.data<void>();
PADDLE_ENFORCE(size < std::numeric_limits<std::streamsize>::max(),
"Index overflow when writing tensor");
if (platform::is_gpu_place(tensor.place())) {
#ifdef PADDLE_WITH_CUDA
constexpr size_t kBufSize = 1024 * 1024 * 64; // 64MB
std::unique_ptr<char[]> buf(new char[kBufSize]);
auto &gpu_dev_ctx =
static_cast<const platform::CUDADeviceContext &>(dev_ctx);
platform::CPUPlace cpu;
uintptr_t data = reinterpret_cast<uintptr_t>(data_ptr);
while (size != 0) {
size_t size_to_write = std::min(kBufSize, static_cast<size_t>(size));
memory::Copy(cpu, buf.get(),
boost::get<platform::CUDAPlace>(tensor.place()),
reinterpret_cast<const void *>(data), size_to_write,
gpu_dev_ctx.stream());
gpu_dev_ctx.Wait();
os.write(buf.get(), size_to_write);
data += size_to_write;
size -= size_to_write;
}
#else
PADDLE_THROW("Unexpected branch");
#endif
} else {
os.write(static_cast<const char *>(data_ptr),
static_cast<std::streamsize>(size));
}
}
{ // the 4th field, lod information
// uint64_t lod_level
// uint64_t lod_level_1 size in byte.
// int* lod_level_1 data
// ...
{
// the 2st field, LoD information
// uint64_t lod_level
// uint64_t lod_level_1 size in byte.
// int* lod_level_1 data
// ...
auto lod = tensor.lod();
uint64_t size = lod.size();
os.write(reinterpret_cast<const char *>(&size), sizeof(size));
@ -256,49 +210,19 @@ void SerializeToStream(std::ostream &os, const LoDTensor &tensor,
static_cast<std::streamsize>(size));
}
}
// the 3st field, Tensor
SerializeToStream(os, static_cast<Tensor>(tensor), dev_ctx);
}
void DeserializeFromStream(std::istream &is, LoDTensor *tensor) {
uint32_t version;
is.read(reinterpret_cast<char *>(&version), sizeof(version));
PADDLE_ENFORCE_EQ(version, 0U, "Only version 0 is supported");
proto::TensorDesc desc;
{ // int32_t size
// proto buffer
int32_t size;
is.read(reinterpret_cast<char *>(&size), sizeof(size));
std::unique_ptr<char[]> buf(new char[size]);
is.read(reinterpret_cast<char *>(buf.get()), size);
PADDLE_ENFORCE(desc.ParseFromArray(buf.get(), size),
"Cannot parse tensor desc");
}
{ // read tensor
std::vector<int64_t> dims;
dims.reserve(static_cast<size_t>(desc.dims().size()));
std::copy(desc.dims().begin(), desc.dims().end(), std::back_inserter(dims));
tensor->Resize(framework::make_ddim(dims));
void *buf;
platform::Place cpu = platform::CPUPlace();
switch (desc.data_type()) {
case proto::FP32:
buf = tensor->mutable_data<float>(cpu);
break;
case proto::FP64:
buf = tensor->mutable_data<double>(cpu);
break;
case proto::INT32:
buf = tensor->mutable_data<int>(cpu);
break;
case proto::INT64:
buf = tensor->mutable_data<int64_t>(cpu);
break;
default:
PADDLE_THROW("DataType %d not supported", desc.data_type());
}
is.read(static_cast<char *>(buf), tensor->memory_size());
}
{ // read lod
{
// the 1st field, unit32_t version for SelectedRows
uint32_t version;
is.read(reinterpret_cast<char *>(&version), sizeof(version));
PADDLE_ENFORCE_EQ(version, 0U, "Only version 0 is supported");
}
{
// the 2st field, LoD information
uint64_t lod_level;
is.read(reinterpret_cast<char *>(&lod_level), sizeof(lod_level));
auto &lod = *tensor->mutable_lod();
@ -312,6 +236,8 @@ void DeserializeFromStream(std::istream &is, LoDTensor *tensor) {
lod[i] = tmp;
}
}
// the 3st filed, Tensor
DeserializeFromStream(is, static_cast<Tensor *>(tensor));
}
} // namespace framework

@ -126,6 +126,20 @@ TEST_F(LoDTensorTester, ShrinkInLevel) {
EXPECT_NE(t1.data<float>(), lod_tensor_.data<float>());
}
TEST_F(LoDTensorTester, SerializeAndDeserialize) {
LoDTensor dst_tensor;
platform::CPUDeviceContext cpu_ctx((platform::CPUPlace()));
std::ostringstream oss;
SerializeToStream(oss, lod_tensor_, cpu_ctx);
std::istringstream iss(oss.str());
DeserializeFromStream(iss, &dst_tensor);
float* dst_ptr = dst_tensor.mutable_data<float>(platform::CPUPlace());
for (int i = 0; i < kLodTensorSize; ++i) {
EXPECT_EQ(dst_ptr[i], i);
}
EXPECT_EQ(dst_tensor.lod(), lod_tensor_.lod());
}
TEST(LodExpand, test) {
LoD lod{{0, 2}};
LoDTensor tensor;

@ -384,6 +384,24 @@ class RuntimeInferShapeContext : public InferShapeContext {
const Scope& scope_;
};
const platform::DeviceContext* GetDeviceContext(
framework::KernelTypePair& kernel_pair) {
auto& actual_kernel_key = kernel_pair.first;
auto& expected_kernel_key = kernel_pair.second;
platform::DeviceContextPool& pool = platform::DeviceContextPool::Instance();
if (platform::is_gpu_place(actual_kernel_key.place_) &&
platform::is_cpu_place(expected_kernel_key.place_)) {
return pool.Get(actual_kernel_key.place_);
} else if (platform::is_cpu_place(actual_kernel_key.place_) &&
platform::is_gpu_place(expected_kernel_key.place_)) {
return pool.Get(expected_kernel_key.place_);
} else {
PADDLE_THROW(
"Currently, model parallelism is only supported between CPU and CUDA");
}
}
void OperatorWithKernel::Run(const Scope& scope,
const platform::Place& place) const {
RuntimeInferShapeContext infer_shape_ctx(*this, scope);
@ -418,9 +436,9 @@ void OperatorWithKernel::Run(const Scope& scope,
"CPU and other devices. For example, multi-GPU model "
"parallelism will failed.");
} else {
auto kernel_pair = std::make_pair(actual_kernel_key, expected_kernel_key);
const DataTransformFn* trans_fun =
DataTransformFnMap::Instance().GetNullable(
std::make_pair(actual_kernel_key, expected_kernel_key));
DataTransformFnMap::Instance().GetNullable(kernel_pair);
if (trans_fun) {
auto input_vars = this->InputVars();
// TODO(qijun) filter the input vars that do not need to be transformed
@ -437,22 +455,18 @@ void OperatorWithKernel::Run(const Scope& scope,
}
if (!need_trans.empty()) {
// TODO(qijun) get appropriate DeviceContext from DeviceContext pool
platform::DeviceContext* trans_dev_ctx = nullptr;
std::vector<platform::DeviceContext*> trans_dev_ctx_vec{trans_dev_ctx};
auto trans_dev_ctx = GetDeviceContext(kernel_pair);
// Wait for transform starting
dev_ctx->Wait();
for (auto var_name : need_trans) {
(*trans_fun)(trans_dev_ctx_vec, *(scope.FindVar(var_name)),
(*trans_fun)(trans_dev_ctx, *(scope.FindVar(var_name)),
scope.FindVar(var_name + framework::KernelTypeToString(
expected_kernel_key)));
}
// Wait for data transform finishing
for (auto ctx : trans_dev_ctx_vec) {
ctx->Wait();
}
trans_dev_ctx->Wait();
}
}
}

@ -12,5 +12,58 @@ limitations under the License. */
#include "paddle/framework/selected_rows.h"
namespace paddle {
namespace framework {} // namespace framework
namespace framework {
void SerializeToStream(std::ostream& os, const SelectedRows& selected_rows,
const platform::DeviceContext& dev_ctx) {
{ // the 1st field, uint32_t version
constexpr uint32_t version = 0;
os.write(reinterpret_cast<const char*>(&version), sizeof(version));
}
{
// the 2st field, rows information
auto& rows = selected_rows.rows();
uint64_t size = rows.size();
os.write(reinterpret_cast<const char*>(&size), sizeof(size));
for (uint64_t i = 0; i < size; ++i) {
os.write(reinterpret_cast<const char*>(&rows[i]), sizeof(rows[i]));
}
}
{
// the 3st field, the height of SelectedRows
int64_t height = selected_rows.height();
os.write(reinterpret_cast<const char*>(&height), sizeof(height));
}
// the 4st field, Tensor data
SerializeToStream(os, selected_rows.value(), dev_ctx);
}
void DeserializeFromStream(std::istream& is, SelectedRows* selected_rows) {
auto tensor = *selected_rows->mutable_value();
{
// the 1st field, unit32_t version for SelectedRows
uint32_t version;
is.read(reinterpret_cast<char*>(&version), sizeof(version));
PADDLE_ENFORCE_EQ(version, 0U, "Only version 0 is supported");
}
{
// the 2st field, rows information
uint64_t size;
is.read(reinterpret_cast<char*>(&size), sizeof(size));
auto& rows = *selected_rows->mutable_rows();
rows.resize(size);
for (uint64_t i = 0; i < size; ++i) {
is.read(reinterpret_cast<char*>(&rows[i]), sizeof(int64_t));
}
}
{
// the 3st field, the height of the SelectedRows
int64_t height;
is.read(reinterpret_cast<char*>(&height), sizeof(int64_t));
selected_rows->set_height(height);
}
// the 4st field, tensor which contains the data
DeserializeFromStream(is, &tensor);
}
} // namespace framework
} // namespace paddle

@ -59,5 +59,14 @@ class SelectedRows {
int64_t height_;
};
/*
* Serialize/Desiralize SelectedRows to std::ostream
* You can pass ofstream or ostringstream to serilize to file
* or to a in memory string. GPU tensor will be copied to CPU.
*/
void SerializeToStream(std::ostream& os, const SelectedRows& selected_rows,
const platform::DeviceContext& dev_ctx);
void DeserializeFromStream(std::istream& is, SelectedRows* selected_rows);
} // namespace framework
} // namespace paddle

Some files were not shown because too many files have changed in this diff Show More

Loading…
Cancel
Save