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Paddle/paddle/trainer/tests/gen_proto_data.py

289 lines
7.8 KiB

# Copyright (c) 2016 Baidu, Inc. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from cStringIO import StringIO
import paddle.proto.DataFormat_pb2 as DataFormat
from google.protobuf.internal.encoder import _EncodeVarint
import logging
import pprint
logging.basicConfig(
format='[%(levelname)s %(asctime)s %(filename)s:%(lineno)s] %(message)s',
)
logger = logging.getLogger('paddle')
logger.setLevel(logging.INFO)
OOV_POLICY_IGNORE = 0
OOV_POLICY_USE = 1
OOV_POLICY_ERROR = 2
num_original_columns = 3
# Feature combination patterns.
# [[-1,0], [0,0]] means previous token at column 0 and current token at
# column 0 are combined as one feature.
patterns = [
[[-2,0]],
[[-1,0]],
[[0,0]],
[[1,0]],
[[2,0]],
[[-1,0], [0,0]],
[[0,0], [1,0]],
[[-2,1]],
[[-1,1]],
[[0,1]],
[[1,1]],
[[2,1]],
[[-2,1], [-1,1]],
[[-1,1], [0,1]],
[[0,1], [1,1]],
[[1,1], [2,1]],
[[-2,1], [-1,1], [0,1]],
[[-1,1], [0,1], [1,1]],
[[0,1], [1,1], [2,1]],
]
def make_features(sequence):
length = len(sequence)
num_features = len(sequence[0])
def get_features(pos):
if pos < 0:
return ['#B%s' % -pos] * num_features
if pos >= length:
return ['#E%s' % (pos - length + 1)] * num_features
return sequence[pos]
for i in xrange(length):
for pattern in patterns:
fname = '/'.join([get_features(i+pos)[f] for pos, f in pattern])
sequence[i].append(fname)
'''
Source file format:
Each line is for one timestep. The features are separated by space.
An empty line indicates end of a sequence.
cutoff: a list of numbers. If count of a feature is smaller than this,
it will be ignored.
if oov_policy[i] is OOV_POLICY_USE, id 0 is reserved for OOV features of
i-th column.
return a list of dict for each column
'''
def create_dictionaries(filename, cutoff, oov_policy):
def add_to_dict(sequence, dicts):
num_features = len(dicts)
for features in sequence:
l = len(features)
assert l == num_features, "Wrong number of features " + line
for i in xrange(l):
if features[i] in dicts[i]:
dicts[i][features[i]] += 1
else:
dicts[i][features[i]] = 1
num_features = len(cutoff)
dicts = []
for i in xrange(num_features):
dicts.append(dict())
f = open(filename, 'rb')
sequence = []
for line in f:
line = line.strip()
if not line:
make_features(sequence)
add_to_dict(sequence, dicts)
sequence = []
continue
features = line.split(' ')
sequence.append(features)
for i in xrange(num_features):
dct = dicts[i]
n = 1 if oov_policy[i] == OOV_POLICY_USE else 0
todo = []
for k, v in dct.iteritems():
if v < cutoff[i]:
todo.append(k)
else:
dct[k] = n
n += 1
if oov_policy[i] == OOV_POLICY_USE:
# placeholder so that len(dct) will be the number of features
# including OOV
dct['#OOV#'] = 0
logger.info('column %d dict size=%d, ignored %d' % (i, n, len(todo)))
for k in todo:
del dct[k]
f.close()
return dicts
def encode_varint(v):
out = StringIO()
_EncodeVarint(out.write, v)
return out.getvalue()
def write_proto(file, message):
s = message.SerializeToString()
packed_len = encode_varint(len(s))
file.write(packed_len + s)
'''
if oov_policy[i] == OOV_POLICY_USE, features in i-th column which are not
existed in dicts[i] will be assigned to id 0.
if oov_policy[i] == OOV_POLICY_ERROR, all features in i-th column MUST exist
in dicts[i].
'''
def gen_proto_file(
input_file,
dicts,
oov_policy,
output_file):
def write_sequence(out, sequence):
num_features = len(dicts)
is_beginning = True
for features in sequence:
assert len(features) == num_features, \
"Wrong number of features: " + line
sample = DataFormat.DataSample()
for i in xrange(num_original_columns):
id = dicts[i].get(features[i], -1)
if id != -1:
sample.id_slots.append(id)
elif oov_policy[i] == OOV_POLICY_IGNORE:
sample.id_slots.append(0xffffffff)
elif oov_policy[i] == OOV_POLICY_ERROR:
logger.fatal("Unknown token: %s" % features[i])
else:
sample.id_slots.append(0)
if patterns:
dim = 0
vec = sample.vector_slots.add()
for i in xrange(num_original_columns, num_features):
id = dicts[i].get(features[i], -1)
if id != -1:
vec.ids.append(dim + id)
elif oov_policy[i] == OOV_POLICY_IGNORE:
pass
elif oov_policy[i] == OOV_POLICY_ERROR:
logger.fatal("Unknown token: %s" % features[i])
else:
vec.ids.append(dim + 0)
dim += len(dicts[i])
sample.is_beginning = is_beginning
is_beginning = False
write_proto(out, sample)
num_features = len(dicts)
f = open(input_file, 'rb')
out = open(output_file, 'wb')
header = DataFormat.DataHeader()
if patterns:
slot_def = header.slot_defs.add()
slot_def.type = DataFormat.SlotDef.VECTOR_SPARSE_NON_VALUE
slot_def.dim = sum([len(dicts[i])
for i in xrange(num_original_columns, len(dicts))])
logger.info("feature_dim=%s" % slot_def.dim)
for i in xrange(num_original_columns):
slot_def = header.slot_defs.add()
slot_def.type = DataFormat.SlotDef.INDEX
slot_def.dim = len(dicts[i])
write_proto(out, header)
num_sequences = 0
sequence = []
for line in f:
line = line.strip()
if not line:
make_features(sequence)
write_sequence(out, sequence)
sequence = []
num_sequences += 1
continue
features = line.split(' ')
sequence.append(features)
f.close()
out.close()
logger.info("num_sequences=%s" % num_sequences)
dict2 = {
'B-ADJP': 0,
'I-ADJP': 1,
'B-ADVP': 2,
'I-ADVP': 3,
'B-CONJP': 4,
'I-CONJP': 5,
'B-INTJ': 6,
'I-INTJ': 7,
'B-LST': 8,
'I-LST': 9,
'B-NP': 10,
'I-NP': 11,
'B-PP': 12,
'I-PP': 13,
'B-PRT': 14,
'I-PRT': 15,
'B-SBAR': 16,
'I-SBAR': 17,
'B-UCP': 18,
'I-UCP': 19,
'B-VP': 20,
'I-VP': 21,
'O': 22
}
if __name__ == '__main__':
cutoff = [3, 1, 0]
cutoff += [3] * len(patterns)
oov_policy = [OOV_POLICY_IGNORE, OOV_POLICY_ERROR, OOV_POLICY_ERROR]
oov_policy += [OOV_POLICY_IGNORE] * len(patterns)
dicts = create_dictionaries(
'trainer/tests/train.txt', cutoff, oov_policy)
dicts[2] = dict2
gen_proto_file(
'trainer/tests/train.txt',
dicts,
oov_policy,
'trainer/tests/train_proto.bin')
gen_proto_file(
'trainer/tests/test.txt',
dicts,
oov_policy,
'trainer/tests/test_proto.bin')