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Paddle/python/paddle/fluid/io.py

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24 KiB

# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import time
import shutil
from paddle.fluid.evaluator import Evaluator
from paddle.fluid.framework import Program, Parameter, default_main_program, Variable
from . import core
__all__ = [
'save_vars', 'save_params', 'save_persistables', 'load_vars', 'load_params',
'load_persistables', 'save_inference_model', 'load_inference_model',
'get_inference_program', 'save_checkpoint', 'load_checkpoint',
'clean_checkpoint', 'load_persist_vars_without_grad',
'save_persist_vars_without_grad', 'get_latest_checkpoint_serial'
]
def is_parameter(var):
"""Check whether the variable is a Parameter.
This function checks whether the input variable is a Parameter.
Args:
var : The input variable.
Returns:
boolean result whether the variable is a Parameter.
"""
return isinstance(var, Parameter)
def is_persistable(var):
if var.desc.type() == core.VarDesc.VarType.FEED_MINIBATCH or \
var.desc.type() == core.VarDesc.VarType.FETCH_LIST:
return False
return var.persistable
def _clone_var_in_block_(block, var):
assert isinstance(var, Variable)
return block.create_var(
name=var.name,
shape=var.shape,
dtype=var.dtype,
type=var.type,
lod_level=var.lod_level,
persistable=True)
def save_vars(executor,
dirname,
main_program=None,
vars=None,
predicate=None,
filename=None):
"""
Save variables to directory by executor.
:param executor: executor that save variable
:param dirname: directory path
:param main_program: program. If vars is None, then filter all variables in this
program which fit `predicate`. Default default_main_program.
:param predicate: The Predicate describes a callable that returns a variable
as a bool. If it returns true, the corresponding input variable will be saved.
:param vars: variables need to be saved. If vars is specified, program & predicate
will be ignored
:param filename: The name of a single file that all vars are saved to.
If it is None, save variables to separate files.
:return: None
"""
if vars is None:
if main_program is None:
main_program = default_main_program()
if not isinstance(main_program, Program):
raise TypeError("program should be as Program type or None")
save_vars(
executor,
dirname=dirname,
vars=filter(predicate, main_program.list_vars()),
filename=filename)
else:
save_program = Program()
save_block = save_program.global_block()
save_var_map = {}
for each_var in vars:
# NOTE: don't save the variable which type is RAW
if each_var.type == core.VarDesc.VarType.RAW:
continue
new_var = _clone_var_in_block_(save_block, each_var)
if filename is None:
save_block.append_op(
type='save',
inputs={'X': [new_var]},
outputs={},
attrs={'file_path': os.path.join(dirname, new_var.name)})
else:
save_var_map[new_var.name] = new_var
if filename is not None:
save_var_list = []
for name in sorted(save_var_map.keys()):
save_var_list.append(save_var_map[name])
save_block.append_op(
type='save_combine',
inputs={'X': save_var_list},
outputs={},
attrs={'file_path': os.path.join(dirname, filename)})
executor.run(save_program)
def save_params(executor, dirname, main_program=None, filename=None):
"""
Save all parameters to directory with executor.
"""
save_vars(
executor,
dirname=dirname,
main_program=main_program,
vars=None,
predicate=is_parameter,
filename=filename)
def save_persistables(executor, dirname, main_program=None, filename=None):
"""
Save all persistables to directory with executor.
"""
save_vars(
executor,
dirname=dirname,
main_program=main_program,
vars=None,
predicate=is_persistable,
filename=filename)
def load_vars(executor,
dirname,
main_program=None,
vars=None,
predicate=None,
filename=None):
"""
Load variables from directory by executor.
:param executor: executor that load variable
:param dirname: directory path
:param main_program: program. If vars is None, then filter all variables in this
program which fit `predicate`. Default default_main_program().
:param predicate: The Predicate describes a callable that returns a variable
as a bool. If it returns true, the corresponding input variable will be loaded.
:param vars: variables need to be loaded. If vars is specified, program &
predicate will be ignored
:param filename: The name of the single file that all vars are loaded from.
If it is None, load variables from separate files.
:return: None
"""
if vars is None:
if main_program is None:
main_program = default_main_program()
if not isinstance(main_program, Program):
raise TypeError("program's type should be Program")
load_vars(
executor,
dirname=dirname,
vars=filter(predicate, main_program.list_vars()),
filename=filename)
else:
load_prog = Program()
load_block = load_prog.global_block()
load_var_map = {}
for each_var in vars:
assert isinstance(each_var, Variable)
if each_var.type == core.VarDesc.VarType.RAW:
continue
new_var = _clone_var_in_block_(load_block, each_var)
if filename is None:
load_block.append_op(
type='load',
inputs={},
outputs={'Out': [new_var]},
attrs={'file_path': os.path.join(dirname, new_var.name)})
else:
load_var_map[new_var.name] = new_var
if filename is not None:
load_var_list = []
for name in sorted(load_var_map.keys()):
load_var_list.append(load_var_map[name])
load_block.append_op(
type='load_combine',
inputs={},
outputs={"Out": load_var_list},
attrs={'file_path': os.path.join(dirname, filename)})
executor.run(load_prog)
def load_params(executor, dirname, main_program=None, filename=None):
"""
load all parameters from directory by executor.
"""
load_vars(
executor,
dirname=dirname,
main_program=main_program,
predicate=is_parameter,
filename=filename)
def load_persistables(executor, dirname, main_program=None, filename=None):
"""
load all persistables from directory by executor.
"""
load_vars(
executor,
dirname=dirname,
main_program=main_program,
predicate=is_persistable,
filename=filename)
def get_inference_program(target_vars, main_program=None):
if main_program is None:
main_program = default_main_program()
if not isinstance(target_vars, list):
target_vars = [target_vars]
vars = []
for var in target_vars:
if isinstance(var, Evaluator):
vars.extend(var.states)
vars.extend(var.metrics)
else:
vars.append(var)
pruned_program = main_program.prune(targets=vars)
inference_program = pruned_program.inference_optimize()
return inference_program
def prepend_feed_ops(inference_program,
feed_target_names,
feed_holder_name='feed'):
if len(feed_target_names) == 0:
return
global_block = inference_program.global_block()
feed_var = global_block.create_var(
name=feed_holder_name,
type=core.VarDesc.VarType.FEED_MINIBATCH,
persistable=True)
for i, name in enumerate(feed_target_names):
out = global_block.var(name)
global_block.prepend_op(
type='feed',
inputs={'X': [feed_var]},
outputs={'Out': [out]},
attrs={'col': i})
def append_fetch_ops(inference_program,
fetch_target_names,
fetch_holder_name='fetch'):
global_block = inference_program.global_block()
fetch_var = global_block.create_var(
name=fetch_holder_name,
type=core.VarDesc.VarType.FETCH_LIST,
persistable=True)
for i, name in enumerate(fetch_target_names):
global_block.append_op(
type='fetch',
inputs={'X': [name]},
outputs={'Out': [fetch_var]},
attrs={'col': i})
def save_inference_model(dirname,
feeded_var_names,
target_vars,
executor,
main_program=None,
model_filename=None,
params_filename=None):
"""
Build a model especially for inference,
and save it to directory by the executor.
:param dirname: directory path
:param feeded_var_names: Names of variables that need to be feeded data during inference
:param target_vars: Variables from which we can get inference results.
:param executor: executor that save inference model
:param main_program: original program, which will be pruned to build the inference model.
Default default_main_program().
:param model_filename: The name of file to save inference program.
If not specified, default filename `__model__` will be used.
:param params_filename: The name of file to save parameters.
It is used for the case that all parameters are saved in a single binary file.
If not specified, parameters are considered saved in separate files.
:return: None
"""
if isinstance(feeded_var_names, basestring):
feeded_var_names = [feeded_var_names]
else:
if len(feeded_var_names) > 0:
if not (bool(feeded_var_names) and all(
isinstance(name, basestring) for name in feeded_var_names)):
raise ValueError("'feed_var_names' should be a list of str.")
if isinstance(target_vars, Variable):
target_vars = [target_vars]
else:
if not (bool(target_vars) and all(
isinstance(var, Variable) for var in target_vars)):
raise ValueError("'target_vars' should be a list of Variable.")
if main_program is None:
main_program = default_main_program()
copy_program = main_program.clone()
if not os.path.isdir(dirname):
os.makedirs(dirname)
# Clear the is_target information and remove the existed feed and fetch op
global_block = copy_program.global_block()
for i, op in enumerate(global_block.ops):
op.desc.set_is_target(False)
if op.type == "feed" or op.type == "fetch":
global_block.remove_op(i)
copy_program.desc.flush()
pruned_program = copy_program.prune(targets=target_vars)
inference_program = pruned_program.inference_optimize()
fetch_var_names = [v.name for v in target_vars]
prepend_feed_ops(inference_program, feeded_var_names)
append_fetch_ops(inference_program, fetch_var_names)
if model_filename is not None:
model_filename = os.path.basename(model_filename)
else:
model_filename = "__model__"
model_filename = os.path.join(dirname, model_filename)
if params_filename is not None:
params_filename = os.path.basename(params_filename)
with open(model_filename, "wb") as f:
f.write(inference_program.desc.serialize_to_string())
save_persistables(executor, dirname, inference_program, params_filename)
def load_inference_model(dirname,
executor,
model_filename=None,
params_filename=None):
"""
Load inference model from a directory
:param dirname: directory path
:param executor: executor that load inference model
:param model_filename: The name of file to load inference program.
If not specified, default filename `__model__` will be used.
:param params_filename: The name of file to load parameters.
It is used for the case that all parameters are saved in a single binary file.
If not specified, parameters are considered saved in separate files.
:return: [program, feed_target_names, fetch_targets]
program: program especially for inference.
feed_target_names: Names of variables that need to feed data
fetch_targets: Variables from which we can get inference results.
"""
if not os.path.isdir(dirname):
raise ValueError("There is no directory named '%s'", dirname)
if model_filename is not None:
model_filename = os.path.basename(model_filename)
else:
model_filename = "__model__"
model_filename = os.path.join(dirname, model_filename)
if params_filename is not None:
params_filename = os.path.basename(params_filename)
with open(model_filename, "rb") as f:
program_desc_str = f.read()
program = Program.parse_from_string(program_desc_str)
load_persistables(executor, dirname, program, params_filename)
feed_target_names = program.desc.get_feed_target_names()
fetch_target_names = program.desc.get_fetch_target_names()
fetch_targets = [
program.global_block().var(name) for name in fetch_target_names
]
return [program, feed_target_names, fetch_targets]
def get_parameter_value(para, executor):
"""
Get the LoDTensor for the parameter
:param executor: executor for retrieving the value
:param para: the given parameter
:return: the LoDTensor for the parameter
"""
assert is_parameter(para)
get_program = Program()
block = get_program.global_block()
new_var = _clone_var_in_block_(block, para)
return executor.run(get_program, feed={}, fetch_list=[new_var])[0]
def get_parameter_value_by_name(name, executor, program=None):
"""
Get the LoDTensor for paramter with the given name
:param executor: executor for retrieving the value
:param name: the name of the parameter
:param program: the program where the variable is found
Default default_main_program().
:return: the LoDTensor for the variable
"""
if program is None:
program = default_main_program()
var = program.global_block().var(name)
return get_parameter_value(var, executor)
SUCCESS_MARK_FILENAME = "_SUCCESS"
CHECKPOINT_PREFIX = "checkpoint"
MODEL_DIR = "__model__"
TRAINER_PREFIX = "trainer"
CHECKPOINT_SEPARATOR = "_"
def save_checkpoint(executor,
checkpoint_dir,
trainer_id,
trainer_args=None,
main_program=None,
max_num_checkpoints=3):
"""
Save Checkpoint will save persistable LodTensor variables from main_program in checkpoint directory,
the directory named by serial number from 0 to (n -1), save_checkpoint use LRU strategy
to keep numbers of checkpoint directory, the numbers of checkpoint directory are max_num_checkpoints at most,
The interval between two saved checkpoints must greater than save_interval_secs.
:param executor executor for save the value
:param checkpoint_dir the checkpoint directory
:param trainer_id currect trainer id, if id is equal to 0, the trainer is chief
:param main_program will save all variables in program
:param max_num_checkpoints will keep numbers of checkpoint serials not bigger than max_num_checkpoints
"""
if checkpoint_dir is None:
raise ValueError("'checkpoint_dir' should not be None")
if trainer_args:
assert isinstance(trainer_args, dict)
if not os.path.isdir(checkpoint_dir):
os.makedirs(checkpoint_dir)
serial = get_latest_checkpoint_serial(checkpoint_dir) + 1
cur_dir = _get_serial_dir(checkpoint_dir, serial)
save_trainer_args(cur_dir, trainer_id, trainer_args)
if trainer_id == 0:
save_persist_vars_without_grad(executor, cur_dir, main_program)
_scroll_delete(checkpoint_dir, max_num_checkpoints)
def load_checkpoint(executor, checkpoint_dir, serial, main_program):
"""
Load checkpoint from a directory by executor,
it will find the most recent saved checkpoint file and load it auto.
:param executor executor for load the value
:param checkpoint_dir the checkpoint directory
:param serial the serial folder in checkpoint directory will be load
:param main_program will load all variables in program
"""
if checkpoint_dir is None:
raise ValueError("'checkpoint_dir' should not be None")
if serial is None or serial < 0:
raise ValueError("'serial' should not be None or <0 ")
if main_program is None:
raise ValueError('main_program should not be None.')
cur_dir = _get_serial_dir(checkpoint_dir, serial)
load_persist_vars_without_grad(executor, cur_dir, main_program, True)
def clean_checkpoint(checkpoint_dir, delete_dir=False):
"""
clean the checkpoint dir, when the train exits normally, the trainer will call clean_checkpoint to delete checkpoint directory saved before.
delete_dir only works when the directory is empty, otherwise, OSError is raised.
:param checkpoint_dir
:param delete_dir
"""
if checkpoint_dir is None:
raise ValueError("'checkpoint_dir' should not be None")
_scroll_delete(checkpoint_dir, max_num_checkpoints=0)
if delete_dir and not os.listdir(checkpoint_dir):
os.rmdir(checkpoint_dir)
def load_persist_vars_without_grad(executor,
dirname,
program,
has_model_dir=False):
"""
load_persist_vars_without_grad will load variables from a directory by an executor,
the variable named end with "@GRAD" will not be loaded.
:param executor executor for load the value
:param dirname the checkpoint directory
:param program will load all variables in program
:param has_model_dir if has_model_dir is True, will load variables from sub directory named __model__
"""
if has_model_dir:
dirname = _get_model_dir(dirname)
load_vars(
executor,
dirname=dirname,
main_program=program,
predicate=_is_checkpoint_var,
filename=None)
def save_persist_vars_without_grad(executor, dirname, program):
"""
save_persist_vars_without_grad will save variables to a directory by an executor,
the variable named end with "@GRAD" will not be saved.
:param executor executor for load the value
:param dirname the checkpoint directory
:param program will load all variables in program
"""
cur_dir = _get_model_dir(dirname)
save_vars(
executor,
dirname=cur_dir,
main_program=program,
vars=None,
predicate=_is_checkpoint_var,
filename=None)
_write_success(cur_dir)
def save_trainer_args(dirname, trainer_id, trainer_args):
assert isinstance(trainer_args, dict)
cur_dir = _get_trainer_dir(dirname, trainer_id)
for name, value in trainer_args.iteritems():
args_file = os.path.join(cur_dir, name)
with open(args_file, 'w') as f:
f.write(str(value))
_write_success(cur_dir)
def load_trainer_args(checkpoint_dir, serial, trainer_id, trainer_args):
assert isinstance(trainer_args, list)
cur_dir = _get_serial_dir(checkpoint_dir, serial)
cur_dir = _get_trainer_dir(cur_dir, trainer_id)
ret_values = []
for arg in trainer_args:
cur_file = os.path.join(cur_dir, arg)
with open(cur_file, 'r') as f:
contents = f.read()
ret_values.append(contents.strip())
return ret_values
def _is_checkpoint_var(var):
"""
the checkpoint will not save or load all the variables.
var type is FEED_MINIBATCH/FETCH_LIST/RAW or var name ends with @GRAD are discarded.
:param var
"""
if var.desc.type() == core.VarDesc.VarType.FEED_MINIBATCH or \
var.desc.type() == core.VarDesc.VarType.FETCH_LIST or \
var.desc.type() == core.VarDesc.VarType.RAW:
return False
# @GRAD are named for gradient variables, checkpoint will not save it.
if "@GRAD" in var.name:
return False
# .trainer_ are named for distribute train variables, checkpoint will not save it.
if ".trainer_" in var.name:
return False
# .block is named for distribute train variables, checkpoint will not save it.
if ".block" in var.name:
return False
return var.persistable
def _get_dir_serial(dirname):
_, serial = dirname.split(CHECKPOINT_SEPARATOR)
try:
serial_num = int(serial)
except ValueError:
serial_num = -1
return serial_num
def _get_serial_dir(dirname, serial):
serial_folder = CHECKPOINT_PREFIX + CHECKPOINT_SEPARATOR + str(serial)
serial_dir = os.path.join(dirname, serial_folder)
if not os.path.isdir(serial_dir):
os.makedirs(serial_dir)
return serial_dir
def _get_model_dir(dirname):
model_dir = os.path.join(dirname, MODEL_DIR)
if not os.path.isdir(model_dir):
os.makedirs(model_dir)
return model_dir
def _get_trainer_dir(dirname, trainer_id):
trainer_folder = TRAINER_PREFIX + CHECKPOINT_SEPARATOR + str(trainer_id)
trainer_dir = os.path.join(dirname, trainer_folder)
if not os.path.isdir(trainer_dir):
os.makedirs(trainer_dir)
return trainer_dir
def _scroll_delete(dirname, max_num_checkpoints=3):
dirs = os.listdir(dirname)
serial_map = {}
for serial in dirs:
serial_num = _get_dir_serial(serial)
serial_map[serial_num] = serial
if len(serial_map.keys()) <= max_num_checkpoints:
return
serials = serial_map.keys()
serials.sort(reverse=True)
serials = serials[max_num_checkpoints:]
for serial in serials:
cur_dir = _get_serial_dir(dirname, serial)
shutil.rmtree(cur_dir)
def _write_success(dirname):
"""
write an empty file named "_SUCCESS" in checkpoint dir, indicate this checkpoint is correct.
:param dirname
"""
success_file = os.path.join(dirname, SUCCESS_MARK_FILENAME)
with open(success_file, 'a') as f:
now = time.ctime()
f.write(now)
def get_latest_checkpoint_serial(checkpoint_dir):
"""
get the latest file in checkpoint directory, the _SUCCESS file must exist in the directory
:param checkpoint_dir
"""
if not checkpoint_dir:
return -1
def has_success(checkpoint_dir, cur_dir):
"""
is _SUCCESS in this dir
"""
serial = _get_dir_serial(cur_dir)
if serial == -1 or not os.path.isdir(
os.path.join(checkpoint_dir, cur_dir)):
return -1
success_path = os.path.join(
_get_serial_dir(checkpoint_dir, serial), MODEL_DIR,
SUCCESS_MARK_FILENAME)
if os.path.isfile(success_path):
return serial
if not os.path.isdir(checkpoint_dir):
return -1
current_dir = -1
dirs = os.listdir(checkpoint_dir)
for cur_dir in dirs:
success_num = has_success(checkpoint_dir, cur_dir)
if success_num > current_dir:
current_dir = success_num
return current_dir