!4215 Add uncertainty toolbox to nn/probability

Merge pull request !4215 from zhangxinfeng3/uncer

mindspore/nn/probability/toolbox/__init__.py

@@ -0,0 +1,21 @@
+# Copyright 2020 Huawei Technologies Co., Ltd
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ============================================================================
+"""
+Uncertainty toolbox.
+"""
+
+from .uncertainty_evaluation import UncertaintyEvaluation
+
+__all__ = ['UncertaintyEvaluation']

tests/st/probability/test_uncertainty.py

@@ -0,0 +1,133 @@
+# Copyright 2020 Huawei Technologies Co., Ltd
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ============================================================================
+""" test uncertainty toolbox """
+import mindspore.dataset as ds
+import mindspore.dataset.transforms.c_transforms as C
+import mindspore.dataset.transforms.vision.c_transforms as CV
+import mindspore.nn as nn
+from mindspore import context, Tensor
+from mindspore.common import dtype as mstype
+from mindspore.common.initializer import TruncatedNormal
+from mindspore.dataset.transforms.vision import Inter
+from mindspore.nn.probability.toolbox.uncertainty_evaluation import UncertaintyEvaluation
+from mindspore.train.serialization import load_checkpoint, load_param_into_net
+
+context.set_context(mode=context.GRAPH_MODE, device_target="GPU")
+
+
+def conv(in_channels, out_channels, kernel_size, stride=1, padding=0):
+    """weight initial for conv layer"""
+    weight = weight_variable()
+    return nn.Conv2d(in_channels, out_channels,
+                     kernel_size=kernel_size, stride=stride, padding=padding,
+                     weight_init=weight, has_bias=False, pad_mode="valid")
+
+
+def fc_with_initialize(input_channels, out_channels):
+    """weight initial for fc layer"""
+    weight = weight_variable()
+    bias = weight_variable()
+    return nn.Dense(input_channels, out_channels, weight, bias)
+
+
+def weight_variable():
+    """weight initial"""
+    return TruncatedNormal(0.02)
+
+
+class LeNet5(nn.Cell):
+    def __init__(self, num_class=10, channel=1):
+        super(LeNet5, self).__init__()
+        self.num_class = num_class
+        self.conv1 = conv(channel, 6, 5)
+        self.conv2 = conv(6, 16, 5)
+        self.fc1 = fc_with_initialize(16 * 5 * 5, 120)
+        self.fc2 = fc_with_initialize(120, 84)
+        self.fc3 = fc_with_initialize(84, self.num_class)
+        self.relu = nn.ReLU()
+        self.max_pool2d = nn.MaxPool2d(kernel_size=2, stride=2)
+        self.flatten = nn.Flatten()
+
+    def construct(self, x):
+        x = self.conv1(x)
+        x = self.relu(x)
+        x = self.max_pool2d(x)
+        x = self.conv2(x)
+        x = self.relu(x)
+        x = self.max_pool2d(x)
+        x = self.flatten(x)
+        x = self.fc1(x)
+        x = self.relu(x)
+        x = self.fc2(x)
+        x = self.relu(x)
+        x = self.fc3(x)
+        return x
+
+
+def create_dataset(data_path, batch_size=32, repeat_size=1,
+                   num_parallel_workers=1):
+    """
+    create dataset for train or test
+    """
+    # define dataset
+    mnist_ds = ds.MnistDataset(data_path)
+
+    resize_height, resize_width = 32, 32
+    rescale = 1.0 / 255.0
+    shift = 0.0
+    rescale_nml = 1 / 0.3081
+    shift_nml = -1 * 0.1307 / 0.3081
+
+    # define map operations
+    resize_op = CV.Resize((resize_height, resize_width), interpolation=Inter.LINEAR)  # Bilinear mode
+    rescale_nml_op = CV.Rescale(rescale_nml, shift_nml)
+    rescale_op = CV.Rescale(rescale, shift)
+    hwc2chw_op = CV.HWC2CHW()
+    type_cast_op = C.TypeCast(mstype.int32)
+
+    # apply map operations on images
+    mnist_ds = mnist_ds.map(input_columns="label", operations=type_cast_op, num_parallel_workers=num_parallel_workers)
+    mnist_ds = mnist_ds.map(input_columns="image", operations=resize_op, num_parallel_workers=num_parallel_workers)
+    mnist_ds = mnist_ds.map(input_columns="image", operations=rescale_op, num_parallel_workers=num_parallel_workers)
+    mnist_ds = mnist_ds.map(input_columns="image", operations=rescale_nml_op, num_parallel_workers=num_parallel_workers)
+    mnist_ds = mnist_ds.map(input_columns="image", operations=hwc2chw_op, num_parallel_workers=num_parallel_workers)
+
+    # apply DatasetOps
+    buffer_size = 10000
+    mnist_ds = mnist_ds.shuffle(buffer_size=buffer_size)  # 10000 as in LeNet train script
+    mnist_ds = mnist_ds.batch(batch_size, drop_remainder=True)
+    mnist_ds = mnist_ds.repeat(repeat_size)
+
+    return mnist_ds
+
+
+if __name__ == '__main__':
+    # get trained model
+    network = LeNet5()
+    param_dict = load_checkpoint('checkpoint_lenet.ckpt')
+    load_param_into_net(network, param_dict)
+    # get train and eval dataset
+    ds_train = create_dataset('workspace/mnist/train')
+    ds_eval = create_dataset('workspace/mnist/test')
+    evaluation = UncertaintyEvaluation(model=network,
+                                       train_dataset=ds_train,
+                                       task_type='classification',
+                                       num_classes=10,
+                                       epochs=5,
+                                       uncertainty_model_path=None)
+    for eval_data in ds_eval.create_dict_iterator():
+        eval_data = Tensor(eval_data['image'], mstype.float32)
+        epistemic_uncertainty = evaluation.eval_epistemic(eval_data)
+        aleatoric_uncertainty = evaluation.eval_aleatoric(eval_data)