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Merge branch 'develop' of https://github.com/PaddlePaddle/Paddle into my_spp_op

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del_some_in_makelist
sweetsky0901 7 years ago
parent 141a323c34 79f0ab55de
commit 89de58d990
471 changed files with 9067 additions and 3472 deletions
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1
.gitignore vendored
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@ -28,3 +28,4 @@ cmake_install.cmake
paddle/.timestamp
python/paddlepaddle.egg-info/
paddle/pybind/pybind.h
python/paddle/version.py

3
CMakeLists.txt
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@ -22,6 +22,8 @@ SET(CMAKE_C_FLAGS_RELWITHDEBINFO "-O3 -g -DNDEBUG")
include(system)
project(paddle CXX C Go)
message(STATUS "CXX compiler: " ${CMAKE_CXX_COMPILER} ", version: " ${CMAKE_CXX_COMPILER_VERSION})
message(STATUS "C compiler: " ${CMAKE_C_COMPILER} ", version: " ${CMAKE_C_COMPILER_VERSION})
find_package(Sphinx)
if(NOT CMAKE_CROSSCOMPILING)
@ -58,6 +60,7 @@ option(GLIDE_INSTALL "Download and install go dependencies " ON)
option(USE_NNPACK "Compile PaddlePaddle with NNPACK library" OFF)
option(WITH_DISTRIBUTE "Compile with grpc distributed support" OFF)
option(USE_EIGEN_FOR_BLAS "Use matrix multiplication in Eigen" OFF)
option(WITH_ARM_FP16 "Use half precision support on armv8.2-a cpu" OFF)
# CMAKE_BUILD_TYPE
if(NOT CMAKE_BUILD_TYPE)

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RELEASE.cn.md
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@ -1,3 +1,62 @@
# v0.11.0版本
## PaddlePaddle Fluid
- PaddlePaddle发布版本v0.11.0包含一个新的特性*PaddlePaddle Fluid*. Fluid 是设计用来让用户像Pytorch和Tensorflow Eager Execution一样执行程序。在这些系统中，不再有*模型*这个概念，应用也不再包含一个用于描述Operator图或者一系列层的符号描述，而是像通用程序那样描述训练或者预测的过程。而Fluid与PyTorch或Eager Execution的区别在于Fluid不依赖Python提供的控制流，例如 if-else-then或者for，而是提供了基于C++实现的控制流并暴露了对应的用with语法实现的Python接口。例如：
https://github.com/PaddlePaddle/Paddle/blob/3df78ed2a98d37f7ae6725894cc7514effd5664b/python/paddle/v2/fluid/tests/test_while_op.py#L36-L44
- 在v0.11.0版本中，我们提供了一个C++类`Executor`用于运行一个Fluid程序。Executor类似一个解释器。在未来的版本中，我们将提升和优化Executor成为一个调试器，就像GDB。并可能提供一些编译器，这个编译器会读取一个上文所描述的应用然后编译成一个等价的
源代码，这个源代码可以被nvcc编译成可以使用CUDA的二进制，或者被icc编译成可以充分利用Intel CPU的二进制。
## 新特点
* 发布 `PaddlePaddle Fluid`。
* 增加了用于模型预测的C-API。
* 用Fluid API实现了一个简单的GAN的例子。
* 增加了关于性能调优的文档。
* 为`paddle.v2.dataset`下载数据集提供了重试机制.
* C++中使用protobuf-lite替换protobuf减少了二进制的大小。
* 发布了新特性 [Elastic Deep Learning (EDL)](https://github.com/PaddlePaddle/cloud/tree/develop/doc/autoscale/experiment).
* 基于Bazel API利用cmake实现了一个的新的构建系统函数库。
* 当使用编译选项`WITH_MKL=ON`时自动下载和编译Intel® [MKLML](https://github.com/01org/mkl-dnn/releases/download/v0.11/mklml_lnx_2018.0.1.20171007.tgz) 函数库.
* [Intel® MKL-DNN on PaddlePaddle](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/design/mkldnn):
- 完成了 11个 MKL-DNN 层: Convolution, Fully connectivity, Pooling, ReLU, Tanh, ELU, Softmax, BatchNorm, AddTo, Concat, LRN。
- 完成了 3个 MKL-DNN 网络: VGG-19, ResNet-50, GoogleNet
- 基于Intel Skylake 6148 CPU的[性能测试](https://github.com/PaddlePaddle/Paddle/blob/develop/benchmark/IntelOptimizedPaddle.md) : 相对于MKLML有2~3倍的训练加速。
* 增加 [softsign activation](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/activation.html#softsign)
* 增加 [dot product layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#dot-prod)
* 增加 [L2 distance layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#l2-distance)
* 增加 [sub-nested sequence layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#sub-nested-seq)
* 增加 [kmax sequence score layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#kmax-sequence-score)
* 增加 [sequence slice layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#seq-slice)
* 增加 [row convolution layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#row-conv)
* 增加移动端友好的网页
## 改进
* 使用一个Python`whl`包即可安装.
* [V2 API可以实现用户定制化评估](https://github.com/PaddlePaddle/models/tree/develop/ltr#训练过程中输出自定义评估指标)。
* 将 `PADDLE_ONLY_CPU` 改为 `PADDLE_WITH_GPU`, 因为我们会支持多种设备。
* 删除了有一些bug的BarrierStat。
* 清理和删除了paddle::Parameter中未使用的函数。
* 删除了ProtoDataProvider。
* Huber loss同时支持回归和分类。
* 为sequence pooling 层增加`stride`参数。
* v2 API自动使用cudnn batch normalization。
* 可以使用一个固定的参数名共享BN层的参数。
* 2D convolution operation支持variable-dimension input特性。
* 重构cmake中关于CUDA的部分并实现自动检测GPU架构的功能。
* 优化网页导航。
## 错误修复
* 修复ROI pooling的Bug. cc9a761
* 修复当label是dense vector是AUC变成0的问题. #5274
* 修复WarpCTC 层的Bug.
# v0.10.0版本
我们非常高兴发布了PaddlePaddle V0.10.0版，并开发了新的[Python API](http://research.baidu.com/paddlepaddles-new-api-simplifies-deep-learning-programs/)。

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RELEASE.md
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@ -1,3 +1,75 @@
# Release v0.11.0
## PaddlePaddle Fluid
- Release 0.11.0 includes a new feature *PaddlePaddle Fluid*. Fluid is
designed to allow users to program like PyTorch and TensorFlow Eager Execution.
In these systems, there is no longer the concept *model* and applications
do not include a symbolic description of a graph of operators nor a sequence
of layers. Instead, applications look exactly like a usual program that
describes a process of training or inference. The difference between
Fluid and PyTorch or Eager Execution is that Fluid doesn't rely on Python's
control-flow, `if-then-else` nor `for`. Instead, Fluid provides its
C++ implementations and their Python binding using the `with` statement. For an example
https://github.com/PaddlePaddle/Paddle/blob/3df78ed2a98d37f7ae6725894cc7514effd5664b/python/paddle/v2/fluid/tests/test_while_op.py#L36-L44
- In 0.11.0, we provides a C++ class `Executor` to run a Fluid program.
Executor works like an interpreter. In future version, we will improve
`Executor` into a debugger like GDB, and we might provide some compilers,
which, for example, takes an application like the above one, and outputs
an equivalent C++ source program, which can be compiled using
[`nvcc`](http://docs.nvidia.com/cuda/cuda-compiler-driver-nvcc/index.html)
to generate binaries that use CUDA, or using
[`icc`](https://software.intel.com/en-us/c-compilers) to generate binaries
that make full use of Intel CPUs.
## New Features
* Release `PaddlePaddle Fluid`.
* Add C-API for model inference
* Use fluid API to create a simple GAN demo.
* Add develop guide about performance tunning.
* Add retry when download `paddle.v2.dataset`.
* Linking protobuf-lite not protobuf in C++. Reduce the binary size.
* Feature [Elastic Deep Learning (EDL)](https://github.com/PaddlePaddle/cloud/tree/develop/doc/autoscale/experiment) released.
* A new style cmake functions for Paddle. It is based on Bazel API.
* Automatically download and compile with Intel® [MKLML](https://github.com/01org/mkl-dnn/releases/download/v0.11/mklml_lnx_2018.0.1.20171007.tgz) library as CBLAS when build `WITH_MKL=ON`.
* [Intel® MKL-DNN on PaddlePaddle](https://github.com/PaddlePaddle/Paddle/tree/develop/doc/design/mkldnn):
- Complete 11 MKL-DNN layers: Convolution, Fully connectivity, Pooling, ReLU, Tanh, ELU, Softmax, BatchNorm, AddTo, Concat, LRN.
- Complete 3 MKL-DNN networks: VGG-19, ResNet-50, GoogleNet
- [Benchmark](https://github.com/PaddlePaddle/Paddle/blob/develop/benchmark/IntelOptimizedPaddle.md) on Intel Skylake 6148 CPU: 2~3x training speedup compared with MKLML.
* Add the [`softsign` activation](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/activation.html#softsign).
* Add the [dot product layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#dot-prod).
* Add the [L2 distance layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#l2-distance).
* Add the [sub-nested sequence layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#sub-nested-seq).
* Add the [kmax sequence score layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#kmax-sequence-score).
* Add the [sequence slice layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#seq-slice).
* Add the [row convolution layer](http://www.paddlepaddle.org/docs/develop/documentation/zh/api/v2/config/layer.html#row-conv)
* Add mobile friendly webpages.
## Improvements
* Build and install using a single `whl` package.
* [Custom evaluating in V2 API](https://github.com/PaddlePaddle/models/tree/develop/ltr#训练过程中输出自定义评估指标).
* Change `PADDLE_ONLY_CPU` to `PADDLE_WITH_GPU`, since we will support many kinds of devices.
* Remove buggy BarrierStat.
* Clean and remove unused functions in paddle::Parameter.
* Remove ProtoDataProvider.
* Huber loss supports both regression and classification.
* Add the `stride` parameter for sequence pooling layers.
* Enable v2 API use cudnn batch normalization automatically.
* The BN layer's parameter can be shared by a fixed the parameter name.
* Support variable-dimension input feature for 2D convolution operation.
* Refine cmake about CUDA to automatically detect GPU architecture.
* Improved website navigation.
## Bug Fixes
* Fix bug in ROI pooling. cc9a761
* Fix AUC is zero when label is dense vector. #5274
* Fix bug in WarpCTC layer.
# Release v0.10.0
We are glad to release version 0.10.0. In this version, we are happy to release the new

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benchmark/IntelOptimizedPaddle.md
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@ -2,27 +2,25 @@
Machine:
- Server
- Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 2 Sockets, 20 Cores per socket
- Laptop
- DELL XPS15-9560-R1745: i7-7700HQ 8G 256GSSD
- i5 MacBook Pro (Retina, 13-inch, Early 2015)
- Desktop
- i7-6700k
- Server: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 2 Sockets, 20 Cores per socket
- Laptop: TBD
System: CentOS release 6.3 (Final), Docker 1.12.1.
PaddlePaddle: paddlepaddle/paddle:latest (for MKLML and MKL-DNN), paddlepaddle/paddle:latest-openblas (for OpenBLAS)
- MKL-DNN tag v0.11
- MKLML 2018.0.1.20171007
- OpenBLAS v0.2.20
(TODO: will rerun after 0.11.0)
PaddlePaddle: (TODO: will rerun after 0.11.0)
- paddlepaddle/paddle:latest (for MKLML and MKL-DNN)
- MKL-DNN tag v0.11
- MKLML 2018.0.1.20171007
- paddlepaddle/paddle:latest-openblas (for OpenBLAS)
- OpenBLAS v0.2.20
On each machine, we will test and compare the performance of training on single node using MKL-DNN / MKLML / OpenBLAS respectively.
## Benchmark Model
### Server
#### Training
Test on batch size 64, 128, 256 on Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
Input image size - 3 * 224 * 224, Time: images/second
@ -35,9 +33,7 @@ Input image size - 3 * 224 * 224, Time: images/second
| MKLML | 12.12 | 13.70 | 16.18 |
| MKL-DNN | 28.46 | 29.83 | 30.44 |
chart on batch size 128
TBD
<img src="figs/vgg-cpu-train.png" width="500">
- ResNet-50
@ -47,9 +43,7 @@ TBD
| MKLML | 32.52 | 31.89 | 33.12 |
| MKL-DNN | 81.69 | 82.35 | 84.08 |
chart on batch size 128
TBD
<img src="figs/resnet-cpu-train.png" width="500">
- GoogLeNet
@ -59,10 +53,35 @@ TBD
| MKLML | 128.46| 137.89| 158.63 |
| MKL-DNN     | 250.46| 264.83| 269.50 |
chart on batch size 128
TBD
<img src="figs/googlenet-cpu-train.png" width="500">
#### Inference
Test on batch size 1, 2, 4, 8, 16 on Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
- VGG-19
| BatchSize | 1 | 2 | 4 | 8 | 16 |
|-----------|-------|-------|-------|-------|-------|
| OpenBLAS | 1.07 | 1.08 | 1.06 | 0.88 | 0.65 |
| MKLML | 5.58 | 9.80 | 15.15 | 21.21 | 28.67 |
| MKL-DNN | 75.07 | 88.64 | 82.58 | 92.29 | 96.75 |
- ResNet-50
| BatchSize | 1 | 2 | 4 | 8 | 16 |
|-----------|-------|--------|--------|--------|--------|
| OpenBLAS | 3.35 | 3.19 | 3.09 | 2.55 | 1.96 |
| MKLML | 6.33 | 12.02 | 22.88 | 40.53 | 63.09 |
| MKL-DNN | 107.83| 148.84 | 177.78 | 189.35 | 217.69 |
- GoogLeNet
| BatchSize | 1 | 2 | 4 | 8 | 16 |
|-----------|--------|--------|--------|--------|--------|
| OpenBLAS | 12.04 | 11.31 | 10.00 | 9.07 | 4.34 |
| MKLML | 22.74 | 41.56 | 81.22 | 133.47 | 210.53 |
| MKL-DNN | 175.10 | 272.92 | 450.70 | 512.00 | 600.94 |
### Laptop
TBD
### Desktop
TBD

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benchmark/paddle/image/run_mkldnn_infer.sh
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@ -4,7 +4,7 @@ function clock_to_seconds() {
hours=`echo $1 | awk -F ':' '{print $1}'`
mins=`echo $1 | awk -F ':' '{print $2}'`
secs=`echo $1 | awk -F ':' '{print $3}'`
echo `bc -l <<< "$secs + $mins * 60 + $hours * 3600"`
echo `awk 'BEGIN{printf "%.2f",('$secs' + '$mins' * 60 + '$hours' * 3600)}'`
}
function infer() {
@ -58,9 +58,9 @@ function infer() {
end=`tail ${log} -n 2 | head -n 1 | awk -F ' ' '{print $2}' | xargs`
start_sec=`clock_to_seconds $start`
end_sec=`clock_to_seconds $end`
fps=`bc <<< "scale = 2; 1280 / ($end_sec - $start_sec)"`
fps=`awk 'BEGIN{printf "%.2f",(1280 / ('$end_sec' - '$start_sec'))}'`
echo "Last 1280 samples start: ${start}(${start_sec} sec), end: ${end}(${end_sec} sec;" >> ${log}
echo "FPS: $fps images/sec" >> ${log}
echo "FPS: $fps images/sec" 2>&1 | tee -a ${log}
}
if [ ! -f "train.list" ]; then

2
cmake/cblas.cmake
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@ -17,7 +17,7 @@ if(WITH_MKLML AND MKLML_INC_DIR AND MKLML_LIB)
set(CBLAS_INC_DIR ${MKLML_INC_DIR})
set(CBLAS_LIBRARIES ${MKLML_LIB})
add_definitions(-DPADDLE_USE_MKLML)
add_definitions(-DPADDLE_WITH_MKLML)
add_definitions(-DLAPACK_FOUND)
message(STATUS "Found cblas and lapack in MKLML "

5
cmake/configure.cmake
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@ -24,6 +24,11 @@ if(WITH_DOUBLE)
add_definitions(-DPADDLE_TYPE_DOUBLE)
endif(WITH_DOUBLE)
if(WITH_ARM_FP16)
add_definitions(-DPADDLE_ARM_FP16)
add_definitions("-march=armv8.2-a+fp16+simd")
endif(WITH_ARM_FP16)
if(WITH_TESTING)
add_definitions(-DPADDLE_WITH_TESTING)
endif(WITH_TESTING)

2
cmake/external/cares.cmake vendored
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@ -33,7 +33,7 @@ ExternalProject_Add(
UPDATE_COMMAND ""
CONFIGURE_COMMAND ./buildconf && ./configure --disable-shared --prefix=${CARES_INSTALL_DIR}
BUILD_IN_SOURCE 1
BUILD_COMMAND make
BUILD_COMMAND make -j8
INSTALL_COMMAND make install
)

2
cmake/external/mkldnn.cmake vendored
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@ -67,5 +67,5 @@ ADD_LIBRARY(mkldnn SHARED IMPORTED GLOBAL)
SET_PROPERTY(TARGET mkldnn PROPERTY IMPORTED_LOCATION ${MKLDNN_LIB})
ADD_DEPENDENCIES(mkldnn ${MKLDNN_PROJECT})
MESSAGE(STATUS "MKLDNN library: ${MKLDNN_LIB}")
add_definitions(-DPADDLE_USE_MKLDNN)
add_definitions(-DPADDLE_WITH_MKLDNN)
LIST(APPEND external_project_dependencies mkldnn)

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cmake/external/openblas.cmake vendored
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@ -114,11 +114,7 @@ INCLUDE_DIRECTORIES(${CBLAS_INC_DIR})
# linear algebra libraries for cc_library(xxx SRCS xxx.c DEPS cblas)
SET(dummyfile ${CMAKE_CURRENT_BINARY_DIR}/cblas_dummy.c)
FILE(WRITE ${dummyfile} "const char * dummy = \"${dummyfile}\";")
IF("${CBLAS_PROVIDER}" STREQUAL "MKLML")
ADD_LIBRARY(cblas SHARED ${dummyfile})
ELSE()
ADD_LIBRARY(cblas STATIC ${dummyfile})
ENDIF()
ADD_LIBRARY(cblas STATIC ${dummyfile})
TARGET_LINK_LIBRARIES(cblas ${CBLAS_LIBRARIES})
IF(NOT ${CBLAS_FOUND})

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doc/api/index_en.rst
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@ -7,3 +7,4 @@ API
v2/model_configs.rst
v2/data.rst
v2/run_logic.rst
v2/fluid.rst

7
doc/api/v2/config/activation.rst
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@ -99,3 +99,10 @@ STanh
.. automodule:: paddle.v2.activation
:members: STanh
:noindex:
SoftSign
========
.. automodule:: paddle.v2.activation
:members: SoftSign
:noindex:

18
doc/api/v2/fluid.rst
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@ -0,0 +1,18 @@
======================
Fluid
======================
.. toctree::
:maxdepth: 1
fluid/layers.rst
fluid/data_feeder.rst
fluid/executor.rst
fluid/initializer.rst
fluid/evaluator.rst
fluid/nets.rst
fluid/optimizer.rst
fluid/param_attr.rst
fluid/profiler.rst
fluid/regularizer.rst

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===========
DataFeeder
===========
DataFeeder
-----------
.. automodule:: paddle.v2.fluid.data_feeder
:members: DataFeeder
:noindex:

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doc/api/v2/fluid/evaluator.rst
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===========
Evaluator
===========
Evaluator
-----------
.. automodule:: paddle.v2.fluid.evaluator
:members: Evaluator
:noindex:

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doc/api/v2/fluid/executor.rst
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===========
Executor
===========
Executor
-----------
.. automodule:: paddle.v2.fluid.executor
:members: Executor
:noindex:

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===========
Initializer
===========
Initializer
-----------
.. automodule:: paddle.v2.fluid.initializer
:members: Initializer
:noindex:
ConstantInitializer
-------------------
.. automodule:: paddle.v2.fluid.initializer
:members: ConstantInitializer
:noindex:
UniformInitializer
------------------
.. automodule:: paddle.v2.fluid.initializer
:members: UniformInitializer
:noindex:
NormalInitializer
-----------------
.. automodule:: paddle.v2.fluid.initializer
:members: NormalInitializer
:noindex:
XavierInitializer
-----------------
.. automodule:: paddle.v2.fluid.initializer
:members: XavierInitializer
:noindex:
MSRAInitializer
---------------
.. automodule:: paddle.v2.fluid.initializer
:members: MSRAInitializer
:noindex:

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doc/api/v2/fluid/nets.rst
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@ -0,0 +1,22 @@
===========
Nets
===========
simple_img_conv_pool
-----------
.. autofunction:: paddle.v2.fluid.nets.simple_img_conv_pool
:noindex:
img_conv_group
-----------
.. autofunction:: paddle.v2.fluid.nets.img_conv_group
:noindex:
sequence_conv_pool
-----------
.. autofunction:: paddle.v2.fluid.nets.sequence_conv_pool
:noindex:

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doc/api/v2/fluid/optimizer.rst
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@ -0,0 +1,54 @@
===========
Optimizer
===========
Optimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: Optimizer
:noindex:
SGDOptimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: SGDOptimizer
:noindex:
MomentumOptimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: MomentumOptimizer
:noindex:
AdagradOptimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: AdagradOptimizer
:noindex:
AdamOptimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: AdamOptimizer
:noindex:
AdamaxOptimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: AdamaxOptimizer
:noindex:
DecayedAdagradOptimizer
-----------
.. automodule:: paddle.v2.fluid.optimizer
:members: DecayedAdagradOptimizer
:noindex:

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doc/api/v2/fluid/param_attr.rst
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@ -0,0 +1,11 @@
===========
ParamAttr
===========
ParamAttr
-----------
.. automodule:: paddle.v2.fluid.param_attr
:members: ParamAttr
:noindex:

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